Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 9.2e-87 323.6 167 100.0
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 5.6e-76 287.7 167 88.0
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.2e-73 280.0 169 84.6
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 7.1e-71 270.8 168 84.5
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.5e-68 263.1 169 80.5
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.9e-68 262.7 167 81.4
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.2e-64 249.2 169 78.7
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 9.6e-60 233.8 168 72.0
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 3.7e-59 231.9 168 71.4
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.8e-58 229.6 165 66.7
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 9.0e-58 227.3 167 70.1
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 3.4e-57 225.3 167 69.5
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 9.9e-57 223.8 167 69.5
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 3.8e-56 221.9 167 68.9
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.4e-55 219.9 168 71.4
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.2e-55 218.8 168 71.4
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 3.2e-55 218.8 168 70.8
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.3e-53 213.4 167 64.1
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 3.9e-53 211.8 167 63.5
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 1.1e-52 210.3 167 66.5
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.1e-52 210.3 165 66.7
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.1e-52 210.3 168 69.0
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 9.6e-52 207.2 167 66.5
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.6e-51 206.5 167 65.3
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 1.6e-51 206.5 169 63.3
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 6.2e-51 204.5 167 65.3
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 6.2e-51 204.5 163 62.0
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.4e-50 203.4 168 63.7
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.1e-50 202.2 168 65.5
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 4.0e-50 201.8 167 65.9
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 5.3e-50 201.4 167 61.1
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 1.2e-49 200.3 168 64.9
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.2e-49 200.3 168 64.9
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.2e-49 200.3 168 65.5
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 1.7e-48 196.4 170 61.8
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.7e-48 196.4 167 61.1
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.2e-48 196.1 168 63.7
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 2.2e-48 196.1 174 63.2
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 2.2e-48 196.1 170 61.2
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 6.5e-48 194.5 170 61.2
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 7.1e-47 191.0 168 61.9
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.2e-46 190.3 170 60.6
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.6e-46 189.9 170 60.6
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 2.7e-46 189.1 168 60.7
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 3.0e-45 185.7 167 60.5
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 1.1e-44 183.7 175 58.9
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.1e-44 183.7 176 59.1
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 3.3e-44 182.2 168 60.7
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 4.8e-43 178.3 175 57.7
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.4e-42 176.0 167 56.9
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.4e-42 176.0 167 56.9
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 2.4e-42 176.0 168 58.3
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 4.5e-41 171.8 172 55.8
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 5.9e-41 171.4 179 58.1
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 5.9e-41 171.4 177 57.6
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 7.6e-41 171.0 167 56.3
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.9e-40 169.1 167 55.7
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 1.9e-39 166.4 167 58.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 1.9e-39 166.4 166 54.8
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 2.5e-39 166.0 164 53.7
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 2.7e-38 162.5 169 55.0
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.7e-38 162.5 167 51.5
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 3.6e-38 162.2 167 54.5
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 4.6e-38 161.8 167 50.9
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 6.1e-38 161.4 167 50.9
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.4e-37 160.2 171 52.0
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 3.9e-37 158.7 167 53.3
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 4.3e-36 155.2 166 54.8
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 7.4e-36 154.5 165 49.7
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 3.7e-35 152.1 167 54.5
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 4.8e-35 151.8 165 53.9
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.4e-34 150.2 170 48.2
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 1.8e-34 149.8 214 45.8
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 4.1e-34 148.7 164 51.8
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 6.9e-34 147.9 193 48.2
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 6.9e-34 147.9 164 53.7
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 9.1e-34 147.5 169 49.7
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 2.6e-33 146.0 193 47.2
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 2.6e-33 146.0 193 47.2
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 2.6e-33 146.0 191 47.1
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.6e-33 146.0 165 50.9
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 3.4e-33 145.6 191 47.1
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 4.5e-33 145.2 214 44.9
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.0e-32 144.1 157 52.2
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.0e-32 144.1 167 48.5
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.3e-32 143.7 208 43.8
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.7e-32 143.3 193 46.6
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 2.9e-32 142.5 163 54.6
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 2.9e-32 142.5 193 46.1
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 8.5e-32 141.0 209 44.0
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 8.5e-32 141.0 169 50.9
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.4e-31 140.2 169 45.0
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 1.9e-31 139.8 172 51.2
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 4.2e-31 138.7 191 45.0
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 5.5e-31 138.3 170 52.4
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 6.1e-30 134.8 168 50.6
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.0e-29 134.0 180 48.9
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 1.4e-29 133.7 190 45.3
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 3.0e-29 132.5 168 50.0
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.9e-29 132.1 168 49.4
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 6.7e-29 131.3 169 43.8
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.1e-28 130.6 167 48.5
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.0e-28 129.8 169 49.7
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 4.4e-28 128.6 173 45.7
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 4.4e-28 128.6 172 46.5
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 4.4e-28 128.6 164 51.8
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 5.7e-28 128.3 139 59.7
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.8e-27 125.2 169 49.1
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.8e-27 125.2 164 46.3
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 6.3e-27 124.8 171 47.4
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 6.3e-27 124.8 163 46.0
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.1e-26 124.0 167 46.1
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.4e-26 123.6 149 48.3
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 1.8e-26 123.2 167 47.3
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.4e-26 122.9 172 43.0
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 3.1e-26 122.5 142 50.7
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 5.3e-26 121.7 177 43.5
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.3e-24 117.1 165 41.8
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 5.0e-24 115.2 152 44.7
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 1.2e-22 110.5 168 44.0
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.2e-22 110.5 166 44.6
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 2.7e-22 109.4 157 41.4
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 4.7e-22 108.6 126 53.2
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 1.4e-21 107.1 196 40.8
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.0e-20 103.2 167 44.9
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 2.4e-18 96.3 148 43.2
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 1.6e-17 93.6 156 37.8
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 1.6e-17 93.6 169 37.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.6e-17 92.8 157 40.1
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 1.5e-15 87.0 164 40.2
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 1.5e-12 77.0 139 36.7
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 9.7e-12 74.3 166 31.3
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 1.8e-10 70.1 164 32.9
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.0e-09 66.6 159 32.1
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.7e-08 63.5 159 30.8
SEGI_38354 Sequoiadendron giganteum HOM05D005769 ORTHO05D006851 2.5e-07 59.7 226 26.5
CSS0038706 Camellia sinensis var. sinensis HOM05D068293 ORTHO05D006851 3.6e-06 55.8 71 50.7
Os07g0520600 Oryza sativa ssp. japonica HOM05D005769 ORTHO05D006851 8.0e-06 54.7 182 30.8


User provided reference genes

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