Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G043300 Theobroma cacao HOM05D008181 ORTHO05D010459 1.3e-149 533.1 282 100.0
Gohir.A12G182333 Gossypium hirsutum HOM05D008195 ORTHO05D000743 1.8e-13 80.9 48 64.6
Gohir.D12G185300 Gossypium hirsutum HOM05D008195 ORTHO05D000743 3.0e-13 80.1 48 64.6
Gorai.008G198700 Gossypium raimondii HOM05D008195 ORTHO05D000743 3.0e-13 80.1 48 64.6
Thecc.10G115900 Theobroma cacao HOM05D008181 ORTHO05D010459 4.8e-11 72.8 113 42.5
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 6.3e-11 72.4 48 62.5
Thecc.09G199400 Theobroma cacao HOM05D008181 ORTHO05D010459 1.4e-10 71.2 98 42.9
Thecc.10G099400 Theobroma cacao HOM05D008181 ORTHO05D010459 5.3e-10 69.3 83 44.6
Thecc.08G166700 Theobroma cacao HOM05D008181 ORTHO05D010459 2.6e-09 67.0 95 43.2
Thecc.05G196700 Theobroma cacao HOM05D008181 ORTHO05D010459 1.0e-08 65.1 49 57.1
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 1.3e-08 64.7 47 57.4
Thecc.06G009500 Theobroma cacao HOM05D008181 ORTHO05D010459 1.3e-08 64.7 71 47.9
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 2.2e-08 63.9 48 56.2
QL03p074129 Quercus lobata HOM05D007909 ORTHO05D000743 2.9e-08 63.5 50 48.0
Thecc.06G057400 Theobroma cacao HOM05D008181 ORTHO05D010459 3.8e-08 63.2 49 55.1
QL03p074219 Quercus lobata HOM05D007909 ORTHO05D000743 1.1e-07 61.6 50 46.0
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 3.2e-07 60.1 48 54.2
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 4.2e-07 59.7 48 52.1
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 4.2e-07 59.7 51 49.0
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 4.2e-07 59.7 48 52.1
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 5.5e-07 59.3 55 43.6
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 7.2e-07 58.9 56 41.1
Thecc.03G161900 Theobroma cacao HOM05D008181 ORTHO05D010459 9.3e-07 58.5 98 37.8
Thecc.10G054600 Theobroma cacao HOM05D008181 ORTHO05D010459 9.3e-07 58.5 75 42.7
unitig_62.g23837 Utricularia gibba HOM05D001093 ORTHO05D000743 1.2e-06 58.2 57 52.6
Eucgr.A02991 Eucalyptus grandis HOM05D001093 ORTHO05D000743 1.6e-06 57.8 55 49.1
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 1.6e-06 57.8 54 46.3
QL12p030770 Quercus lobata HOM05D007909 ORTHO05D000743 1.6e-06 57.8 50 44.0
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.6e-06 57.8 48 50.0
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.6e-06 57.8 58 46.6
Ah.04g156190 Amaranthus hybridus HOM05D001093 ORTHO05D000743 2.1e-06 57.4 63 49.2
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 2.1e-06 57.4 44 47.7
Oeu027893.3 Olea europaea HOM05D001093 ORTHO05D000743 2.1e-06 57.4 60 46.7
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 2.1e-06 57.4 48 54.2
CiPaw.05G213100 Carya illinoinensis HOM05D001093 ORTHO05D000743 2.7e-06 57.0 55 49.1
CsaV3_1G033720 Cucumis sativus L. HOM05D034807 ORTHO05D034786 2.7e-06 57.0 53 43.4
MBI19_g34071_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 2.7e-06 57.0 60 51.7
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 2.7e-06 57.0 60 51.7
Thecc.06G088800 Theobroma cacao HOM05D008181 ORTHO05D010459 2.7e-06 57.0 150 32.7
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 3.5e-06 56.6 44 45.5
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 3.5e-06 56.6 45 46.7
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 3.5e-06 56.6 52 44.2
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 3.5e-06 56.6 58 46.6
Ciclev10033462m.g Citrus clementina HOM05D001093 ORTHO05D000743 4.6e-06 56.2 64 48.4
Haze_07715 Corylus avellana HOM05D008195 ORTHO05D010605 4.6e-06 56.2 51 41.2
QL09p020804 Quercus lobata HOM05D001093 ORTHO05D000743 4.6e-06 56.2 72 45.8
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 4.6e-06 56.2 46 54.3
Ca_24429_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 6.1e-06 55.8 60 43.3
Duzib084G1408 Durio zibethinus HOM05D001093 ORTHO05D000743 6.1e-06 55.8 66 47.0
Duzib106G0988 Durio zibethinus HOM05D001093 ORTHO05D000743 6.1e-06 55.8 65 43.1
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 6.1e-06 55.8 49 49.0
Mapoly0047s0113 Marchantia polymorpha HOM05D001093 ORTHO05D000743 6.1e-06 55.8 48 50.0
Nn1g00516 Nelumbo nucifera HOM05D001093 ORTHO05D000743 6.1e-06 55.8 62 48.4
Prupe.5G038800 Prunus persica HOM05D001093 ORTHO05D000743 6.1e-06 55.8 62 46.8
QL03p074255 Quercus lobata HOM05D007909 ORTHO05D000743 6.1e-06 55.8 49 42.9
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.1e-06 55.8 52 46.2
SGA_v2.0_scaffold59G20737 Striga asiatica HOM05D001093 ORTHO05D000743 6.1e-06 55.8 52 48.1
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 6.1e-06 55.8 45 48.9
Ah.12g055000 Amaranthus hybridus HOM05D001093 ORTHO05D000743 7.9e-06 55.5 66 47.0
Duzib177G0861 Durio zibethinus HOM05D001093 ORTHO05D000743 7.9e-06 55.5 67 43.3
Gohir.A12G208600 Gossypium hirsutum HOM05D001093 ORTHO05D000743 7.9e-06 55.5 50 52.0
Thecc.01G188500 Theobroma cacao HOM05D008181 ORTHO05D010459 7.9e-06 55.5 82 42.7
Thecc.01G399000 Theobroma cacao HOM05D008181 ORTHO05D010459 7.9e-06 55.5 106 37.7
Thecc.05G222300 Theobroma cacao HOM05D001093 ORTHO05D000743 7.9e-06 55.5 65 41.5


User provided reference genes

Program Settings