Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.5e-275 952.2 476 100.0
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.4e-212 742.3 530 73.8
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 9.5e-153 544.3 476 64.7
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.2e-147 527.3 476 62.6
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.0e-146 524.2 476 62.2
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 3.2e-116 422.9 475 52.0
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 4.3e-113 412.5 447 51.9
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 3.6e-112 409.5 461 51.8
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 6.2e-112 408.7 473 51.4
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.4e-111 407.5 493 49.7
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.1e-111 406.4 461 51.2
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 8.4e-109 398.3 485 48.7
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.6e-107 394.0 439 51.9
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 2.1e-107 393.7 477 50.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 8.7e-106 388.3 471 47.3
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 3.3e-105 386.3 449 51.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.4e-103 380.2 452 50.9
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 3.1e-103 379.8 470 47.9
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.4e-100 370.9 460 47.0
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 8.7e-98 361.7 475 46.3
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.5e-97 360.9 479 48.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 3.3e-97 359.8 477 46.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.7e-96 356.3 429 49.4
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.8e-95 354.0 474 43.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 3.1e-95 353.2 484 45.7
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 9.0e-95 351.7 473 46.1
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.8e-93 346.3 475 43.8
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 5.5e-92 342.4 440 46.1
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.2e-91 341.3 494 45.1
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.9e-90 336.3 432 48.1
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.1e-89 334.7 438 46.1
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.9e-89 334.0 485 44.7
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 7.4e-89 332.0 455 46.8
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.1e-88 330.5 493 43.0
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.1e-88 330.5 440 44.8
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 4.1e-87 326.2 451 42.6
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.1e-87 326.2 488 41.8
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.5e-86 322.8 466 42.1
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.3e-85 321.2 443 44.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 3.8e-85 319.7 439 43.3
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 2.5e-84 317.0 443 42.7
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.6e-83 312.8 471 42.0
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.3e-82 311.2 452 44.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.9e-82 309.7 475 41.5
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 5.7e-81 305.8 423 44.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 4.8e-80 302.8 440 42.7
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 2.6e-78 297.0 444 42.3
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 5.9e-78 295.8 434 42.2
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 7.7e-78 295.4 434 42.2
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 1.0e-77 295.0 433 42.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.7e-77 294.3 472 39.6
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 2.2e-77 293.9 448 39.7
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.9e-77 293.5 474 39.5
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.1e-76 291.6 428 43.7
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.1e-76 291.6 472 40.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.9e-76 290.8 469 38.6
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.2e-76 288.9 415 41.9
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 4.6e-75 286.2 469 39.4
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 7.9e-75 285.4 439 41.9
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.8e-74 284.3 454 41.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 3.0e-74 283.5 451 42.1
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 3.0e-74 283.5 437 41.9
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.1e-73 281.6 453 41.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.5e-73 281.2 467 40.0
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.6e-73 280.4 430 40.2
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-72 276.9 489 39.3
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 1.4e-71 274.6 440 40.2
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 6.9e-71 272.3 471 40.3
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.5e-70 271.2 435 37.9
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.6e-70 270.4 451 39.0
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 5.9e-70 269.2 460 39.3
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 5.9e-70 269.2 460 40.7
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.0e-69 268.5 424 41.3
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.3e-69 268.1 460 40.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.7e-69 267.7 472 37.5
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.8e-69 266.5 422 41.5
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 4.7e-67 259.6 460 39.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 4.7e-67 259.6 460 39.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 6.1e-67 259.2 566 34.8
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-66 258.1 411 40.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 4.4e-65 253.1 421 39.7
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.3e-64 251.5 424 39.6
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.2e-64 250.8 488 34.2
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-63 247.3 431 38.7
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 4.1e-63 246.5 438 35.8
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.6e-62 244.6 428 38.6
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 2.0e-62 244.2 429 37.1
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.5e-62 243.0 198 58.6
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 5.9e-62 242.7 487 34.7
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.2e-61 240.7 432 36.6
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.5e-60 238.0 430 40.0
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 3.6e-59 233.4 450 36.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.7e-59 233.0 429 36.1
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-56 224.9 469 35.4
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-56 224.6 378 38.9
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.3e-56 222.6 369 39.6
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 2.7e-54 217.2 169 63.9
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.5e-52 211.5 196 54.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 3.2e-52 210.3 166 63.9
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.2e-51 208.4 197 52.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 3.0e-50 203.8 206 51.9
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 1.1e-44 185.3 170 51.2
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 3.2e-44 183.7 155 59.4
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.8e-40 170.6 433 30.9
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 2.4e-39 167.5 375 30.9
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 6.1e-35 152.9 149 51.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 5.2e-34 149.8 334 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 4.6e-30 136.7 424 30.9
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 7.3e-28 129.4 162 49.4
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 1.5e-25 121.7 77 76.6
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.7e-24 118.2 316 31.3
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 3.7e-24 117.1 436 28.0
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.9e-23 114.8 159 45.3
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.4e-23 114.4 121 55.4
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 2.4e-23 114.4 102 57.8
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.9e-21 107.1 117 50.4
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.2e-17 95.5 55 74.5
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 7.5e-17 92.8 86 48.8
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.2e-16 91.3 83 50.6
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 7.1e-15 86.3 159 32.7
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.7e-13 81.6 60 63.3


User provided reference genes

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