Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G041300 Theobroma cacao HOM05D008244 ORTHO05D009402 1.8e-309 1065.1 535 100.0
Thecc.07G062400 Theobroma cacao HOM05D008244 ORTHO05D009402 6.1e-241 837.4 535 79.8
Thecc.07G041100 Theobroma cacao HOM05D008244 ORTHO05D009402 1.5e-231 806.2 536 78.0
Thecc.07G062700 Theobroma cacao HOM05D008244 ORTHO05D009402 4.9e-214 748.0 535 71.6
Thecc.07G041400 Theobroma cacao HOM05D008244 ORTHO05D009402 3.0e-115 419.9 269 81.0
Thecc.07G040900 Theobroma cacao HOM05D008244 ORTHO05D009402 5.2e-115 419.1 269 81.0
Thecc.07G062600 Theobroma cacao HOM05D008244 ORTHO05D009402 6.1e-100 369.0 251 75.3
DCAR_022571 Daucus carota HOM05D008244 ORTHO05D009402 6.0e-55 219.5 558 32.8
Zm00001eb060190 Zea mays HOM05D008244 ORTHO05D009402 1.3e-52 211.8 509 34.4
TWI14G1100 Tripterygium wilfordii HOM05D008244 ORTHO05D009402 2.0e-50 204.5 544 32.5
Hma1.2p1_0305F.1_g119380 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 2.2e-49 201.1 528 31.8
Thecc.07G062500 Theobroma cacao HOM05D008244 ORTHO05D009402 3.8e-49 200.3 128 80.5
CANSAT64G2823 Cannabis sativa HOM05D008244 ORTHO05D009402 3.2e-40 170.6 588 29.9
DCAR_022572 Daucus carota HOM05D008244 ORTHO05D009402 1.1e-37 162.2 517 26.5
TAR636G0515 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.5e-37 161.0 283 39.6
EL10Ac4g07678 Beta vulgaris HOM05D008244 ORTHO05D009402 4.3e-37 160.2 566 29.9
AUR62020324 Chenopodium quinoa HOM05D008244 ORTHO05D009402 6.9e-35 152.9 560 27.9
Ah.04g166200 Amaranthus hybridus HOM05D008244 ORTHO05D009402 3.7e-28 130.6 419 29.8
Sabra17G0026000 Salix brachista HOM05D008244 ORTHO05D009402 3.1e-27 127.5 201 41.8
Hma1.2p1_0642F.1_g194310 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 2.6e-26 124.4 246 35.0
Hma1.2p1_2166F.1_g315860 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 2.6e-26 124.4 246 35.0
TAR633G2532 Trochodendron aralioides HOM05D008244 ORTHO05D009402 4.5e-26 123.6 264 36.7
EL10Ac5g12370 Beta vulgaris HOM05D008899 ORTHO05D009402 7.7e-26 122.9 234 38.0
TAR636G1541 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.9e-25 120.9 265 36.2
TAR636G0746 Trochodendron aralioides HOM05D008244 ORTHO05D009402 8.5e-25 119.4 261 36.4
TAR636G3080 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.4e-24 118.6 260 35.8
TAR636G1905 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.2e-23 115.5 234 35.9
Potri.017G011000 Populus trichocarpa HOM05D008244 ORTHO05D009402 1.6e-23 115.2 371 29.4
TAR629G2654 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.3e-22 111.3 283 38.2
TAR362G0980 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.0e-22 110.9 259 33.2
TAR636G1005 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.1e-19 100.9 213 38.0
TAR636G1019 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.6e-18 97.8 269 31.6
TAR629G3474 Trochodendron aralioides HOM05D008244 ORTHO05D009402 5.9e-18 96.7 220 38.6
Hma1.2p1_0074F.1_g038655 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 1.7e-17 95.1 285 33.0
TAR636G1283 Trochodendron aralioides HOM05D000739 ORTHO05D009402 2.2e-17 94.7 257 30.7
Hma1.2p1_1178F.1_g264420 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 5.0e-17 93.6 272 33.5
TAR636G3117 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.9e-16 91.7 254 31.9
EL10Ac5g12367 Beta vulgaris HOM05D008899 ORTHO05D009402 5.5e-16 90.1 123 45.5
Hma1.2p1_0305F.1_g119690 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 5.5e-16 90.1 261 32.2
SGA_v2.0_scaffold12G06021 Striga asiatica HOM05D008244 ORTHO05D009402 1.6e-15 88.6 555 23.2
EL10Ac5g12351 Beta vulgaris HOM05D008899 ORTHO05D009402 3.6e-15 87.4 123 44.7
EL10Ac5g12352 Beta vulgaris HOM05D008899 ORTHO05D009402 4.7e-15 87.0 123 43.9
EL10Ac5g12354 Beta vulgaris HOM05D008899 ORTHO05D009402 6.1e-15 86.7 123 43.9
TAR636G0092 Trochodendron aralioides HOM05D008244 ORTHO05D009402 7.9e-15 86.3 208 30.8
AUR62011480 Chenopodium quinoa HOM05D008899 ORTHO05D009402 6.7e-14 83.2 121 42.1
AUR62011484 Chenopodium quinoa HOM05D008899 ORTHO05D009402 6.7e-14 83.2 121 42.1
EL10Ac5g12368 Beta vulgaris HOM05D008899 ORTHO05D009402 8.8e-14 82.8 97 50.5
TAR362G0489 Trochodendron aralioides HOM05D008244 ORTHO05D009402 8.8e-14 82.8 242 30.2
EL10Ac5g12372 Beta vulgaris HOM05D008899 ORTHO05D009402 5.7e-13 80.1 97 49.5
EL10Ac5g12371 Beta vulgaris HOM05D008899 ORTHO05D009402 7.4e-13 79.7 97 49.5
Hma1.2p1_0305F.1_g119680 Hydrangea macrophylla HOM05D008244 ORTHO05D009402 1.7e-12 78.6 152 37.5
AUR62011099 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62011101 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62011103 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62011104 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62011105 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62044543 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62044544 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62044693 Chenopodium quinoa HOM05D008899 ORTHO05D009402 2.8e-12 77.8 123 41.5
AUR62044694 Chenopodium quinoa HOM05D008899 ORTHO05D009402 6.3e-12 76.6 123 40.7
TAR636G2088 Trochodendron aralioides HOM05D008244 ORTHO05D009402 6.3e-12 76.6 116 42.2
Ah.06g188270 Amaranthus hybridus HOM05D008244 ORTHO05D009402 1.4e-11 75.5 134 36.6
AUR62014028 Chenopodium quinoa HOM05D008899 ORTHO05D009402 1.8e-11 75.1 136 39.0
AUR62014029 Chenopodium quinoa HOM05D008899 ORTHO05D009402 1.8e-11 75.1 136 39.0
AUR62014030 Chenopodium quinoa HOM05D008899 ORTHO05D009402 1.8e-11 75.1 136 39.0
AUR62014031 Chenopodium quinoa HOM05D008899 ORTHO05D009402 1.8e-11 75.1 136 39.0
TAR636G1851 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.8e-11 75.1 145 40.7
AUR62014026 Chenopodium quinoa HOM05D008899 ORTHO05D009402 3.1e-11 74.3 134 38.8
AUR62014032 Chenopodium quinoa HOM05D008899 ORTHO05D009402 3.1e-11 74.3 134 38.8
AUR62014027 Chenopodium quinoa HOM05D008899 ORTHO05D009402 4.1e-11 73.9 134 38.8
TAR636G3091 Trochodendron aralioides HOM05D008244 ORTHO05D009402 5.3e-11 73.6 243 31.3
AUR62044541 Chenopodium quinoa HOM05D008899 ORTHO05D009402 7.0e-11 73.2 118 40.7
AUR62014011 Chenopodium quinoa HOM05D008899 ORTHO05D009402 9.1e-11 72.8 122 38.5
TAR636G0857 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.5e-10 72.0 180 32.8
AUR62044542 Chenopodium quinoa HOM05D008899 ORTHO05D009402 7.7e-10 69.7 97 43.3
TAR636G0384 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.3e-09 68.9 133 39.8
Ah.03g137140 Amaranthus hybridus HOM05D008244 ORTHO05D021209 3.8e-09 67.4 304 27.3
Manes.04G007500 Manihot esculenta HOM05D007873 ORTHO05D008474 5.0e-09 67.0 204 27.5
Manes.04G007600 Manihot esculenta HOM05D007873 ORTHO05D008474 5.0e-09 67.0 204 29.4
Duzib147G1581 Durio zibethinus HOM05D007873 ORTHO05D008474 8.5e-09 66.2 248 27.8
Duzib147G1609 Durio zibethinus HOM05D007873 ORTHO05D008474 1.1e-08 65.9 176 30.7
EL10Ac5g12373 Beta vulgaris HOM05D008899 ORTHO05D009402 1.9e-08 65.1 90 44.4
TAR636G3396 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.1e-07 61.6 88 44.3
Gohir.D13G076700 Gossypium hirsutum HOM05D007873 ORTHO05D008474 3.6e-07 60.8 295 25.8
AUR62011102 Chenopodium quinoa HOM05D008899 ORTHO05D009402 8.0e-07 59.7 122 36.9
EL10Ac8g20100 Beta vulgaris HOM05D008899 ORTHO05D009402 1.0e-06 59.3 125 35.2
Gorai.013G087700 Gossypium raimondii HOM05D007873 ORTHO05D008474 1.0e-06 59.3 295 25.4
Manes.04G007700 Manihot esculenta HOM05D007873 ORTHO05D008474 1.0e-06 59.3 219 26.9
Gohir.A13G077500 Gossypium hirsutum HOM05D007873 ORTHO05D008474 2.3e-06 58.2 176 29.5
AUR62011098 Chenopodium quinoa HOM05D008899 ORTHO05D009402 3.9e-06 57.4 123 35.0
TAR636G1524 Trochodendron aralioides HOM05D008244 ORTHO05D009402 8.8e-06 56.2 80 37.5


User provided reference genes

Program Settings