Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G038400 Theobroma cacao HOM05D002077 ORTHO05D000818 4.4e-200 701.0 342 100.0
Thecc.07G038300 Theobroma cacao HOM05D001536 ORTHO05D000818 5.3e-113 411.8 240 84.6
COL.COLO4_36569 Corchorus olitorius HOM05D002077 ORTHO05D000818 5.0e-55 219.2 332 39.2
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 6.2e-21 105.9 335 26.0
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 1.5e-19 101.3 226 29.6
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 6.4e-18 95.9 250 31.6
TAR627G0443 Trochodendron aralioides HOM05D002077 ORTHO05D000818 6.4e-18 95.9 156 37.8
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 8.4e-18 95.5 315 29.2
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.4e-17 94.7 288 29.5
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.4e-17 94.7 272 28.7
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.4e-17 94.7 263 28.9
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 2.4e-17 94.0 312 28.5
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 3.2e-17 93.6 267 28.8
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 4.2e-17 93.2 243 30.9
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 5.4e-17 92.8 282 28.4
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 5.4e-17 92.8 257 27.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 7.1e-17 92.4 258 27.9
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.2e-16 91.7 294 29.3
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 1.2e-16 91.7 243 26.3
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.6e-16 91.3 256 24.6
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.6e-16 91.3 258 28.7
Rhsim13G0155700 Rhododendron simsii HOM05D011823 ORTHO05D014382 1.6e-16 91.3 273 26.7
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 2.1e-16 90.9 240 27.5
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.1e-16 90.9 258 27.5
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 2.1e-16 90.9 258 29.5
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 2.7e-16 90.5 243 30.0
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 3.5e-16 90.1 312 27.6
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 6.0e-16 89.4 285 28.8
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 7.8e-16 89.0 270 28.9
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 1.3e-15 88.2 260 26.9
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.3e-15 88.2 291 26.8
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 1.7e-15 87.8 259 29.3
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 2.3e-15 87.4 316 27.5
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 2.3e-15 87.4 260 30.0
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 3.0e-15 87.0 260 28.8
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 3.9e-15 86.7 249 28.9
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 5.1e-15 86.3 250 28.0
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 5.1e-15 86.3 259 29.0
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 6.6e-15 85.9 277 28.9
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 6.6e-15 85.9 301 26.9
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 1.5e-14 84.7 253 28.5
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.5e-14 84.7 265 28.3
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.5e-14 84.7 258 27.1
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.5e-14 84.7 297 28.6
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 1.5e-14 84.7 260 28.1
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 1.9e-14 84.3 251 27.5
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.9e-14 84.3 328 26.2
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.9e-14 84.3 258 27.5
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 1.9e-14 84.3 258 26.7
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 2.5e-14 84.0 314 28.0
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.5e-14 84.0 251 29.1
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 3.3e-14 83.6 293 27.6
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 3.3e-14 83.6 297 28.3
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 4.3e-14 83.2 260 28.1
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 5.6e-14 82.8 183 29.0
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 5.6e-14 82.8 270 28.1
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 5.6e-14 82.8 270 28.1
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 5.6e-14 82.8 270 28.1
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 7.3e-14 82.4 254 24.4
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 7.3e-14 82.4 295 26.4
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 7.3e-14 82.4 251 27.5
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 1.2e-13 81.6 295 27.8
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.8e-13 80.5 295 26.4
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 2.8e-13 80.5 294 27.2
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.6e-13 80.1 296 26.4
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 6.2e-13 79.3 266 28.2
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 6.2e-13 79.3 268 26.5
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 6.2e-13 79.3 284 26.4
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 6.2e-13 79.3 304 26.0
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.1e-12 78.6 299 27.1
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 1.4e-12 78.2 253 28.5
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 3.1e-12 77.0 296 27.4
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 3.1e-12 77.0 296 26.4
COL.COLO4_16618 Corchorus olitorius HOM05D002077 ORTHO05D000818 6.9e-12 75.9 250 24.8
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 9.0e-12 75.5 251 27.5
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.5e-11 74.7 323 24.5
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.5e-11 74.7 270 26.7
FvH4_5g01901 Fragaria vesca HOM05D002077 ORTHO05D000818 4.4e-11 73.2 288 25.7
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 5.8e-11 72.8 299 26.4
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 7.6e-11 72.4 248 28.6
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 9.9e-11 72.0 259 26.3
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.7e-10 71.2 243 25.9
CARHR189810 Cardamine hirsuta HOM05D002077 ORTHO05D000818 2.9e-10 70.5 301 23.3
FvH4_5g01910 Fragaria vesca HOM05D002077 ORTHO05D000818 3.8e-10 70.1 237 26.2
Aqoxy4G02851 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 4.9e-10 69.7 248 26.2
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 4.9e-10 69.7 295 24.7
Medtr7g075970 Medicago truncatula HOM05D002077 ORTHO05D000818 4.9e-10 69.7 270 24.4
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 6.4e-10 69.3 185 27.6
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.1e-09 68.6 321 23.4
Lsat_1_v5_gn_7_32101 Lactuca sativa HOM05D000710 ORTHO05D000336 1.4e-09 68.2 244 25.4
COL.COLO4_28668 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.4e-09 67.4 57 45.6
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 3.2e-09 67.0 248 26.6
CSS0033539 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 5.4e-09 66.2 308 25.3
Lsat_1_v5_gn_2_66360 Lactuca sativa HOM05D000710 ORTHO05D000336 5.4e-09 66.2 245 24.1
Medtr7g074410 Medicago truncatula HOM05D002077 ORTHO05D000818 5.4e-09 66.2 240 25.4
Rhsim09G0057500 Rhododendron simsii HOM05D002273 ORTHO05D000818 5.4e-09 66.2 257 23.7
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 9.3e-09 65.5 244 26.2
CSS0033824 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 1.2e-08 65.1 305 25.6
ATR0787G011 Amborella trichopoda HOM05D010175 ORTHO05D012300 2.1e-08 64.3 256 22.3
TPR.G14717 Trifolium pratense HOM05D002077 ORTHO05D000818 2.1e-08 64.3 236 24.6
Atru.chr10.1018 Acer truncatum HOM05D000710 ORTHO05D000336 2.7e-08 63.9 239 26.8
Atru.chr10.1027 Acer truncatum HOM05D000710 ORTHO05D000336 2.7e-08 63.9 239 26.8
Lsat_1_v5_gn_6_60060 Lactuca sativa HOM05D002273 ORTHO05D000818 2.7e-08 63.9 252 21.8
Aa31LG9G8910 Aethionema arabicum HOM05D000710 ORTHO05D000336 3.5e-08 63.5 256 24.2
Glyma.02G057300 Glycine max HOM05D002077 ORTHO05D000818 3.5e-08 63.5 227 23.8
Medtr7g074430 Medicago truncatula HOM05D002077 ORTHO05D000818 3.5e-08 63.5 264 25.0
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 3.5e-08 63.5 242 24.4
Glyma.01G100400 Glycine max HOM05D002077 ORTHO05D000818 4.6e-08 63.2 227 23.8
Psat5g121720 Pisum sativum HOM05D000710 ORTHO05D000336 7.8e-08 62.4 259 22.8
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 7.8e-08 62.4 221 26.2
Psat3g113640 Pisum sativum HOM05D002077 ORTHO05D000818 1.0e-07 62.0 262 24.0
Atru.chr10.1019 Acer truncatum HOM05D000710 ORTHO05D000336 1.3e-07 61.6 239 25.1
Atru.chr10.1028 Acer truncatum HOM05D000710 ORTHO05D000336 1.3e-07 61.6 239 25.1
BcaB01g01970 Brassica carinata HOM05D000710 ORTHO05D000336 1.3e-07 61.6 244 24.6
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 1.3e-07 61.6 281 26.0
HanXRQChr04g0112131 Helianthus annuus HOM05D000710 ORTHO05D000336 1.3e-07 61.6 235 25.5
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.3e-07 61.6 252 27.0
FvH4_3g32353 Fragaria vesca HOM05D002077 ORTHO05D000818 1.7e-07 61.2 241 26.6
Aqoxy7G02717 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.3e-07 60.8 143 33.6
Psat3g113600 Pisum sativum HOM05D002077 ORTHO05D000818 2.3e-07 60.8 262 23.3
BraA01t04601Z Brassica rapa HOM05D002077 ORTHO05D000818 3.0e-07 60.5 245 23.3
arahy.Tifrunner.gnm1.ann1.DJ3X7X Arachis hypogaea HOM05D002077 ORTHO05D000818 3.9e-07 60.1 157 29.3
PSO541G2007 Papaver somniferum HOM05D000710 ORTHO05D000336 3.9e-07 60.1 237 24.9
Thhalv10009631m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 5.1e-07 59.7 237 24.9
arahy.Tifrunner.gnm1.ann1.R7U9VL Arachis hypogaea HOM05D002077 ORTHO05D000818 8.7e-07 58.9 278 24.5
Aqoxy7G01052 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.5e-06 58.2 101 38.6
BcaB01g02735 Brassica carinata HOM05D000710 ORTHO05D000336 1.5e-06 58.2 247 23.5
BcaB03g13387 Brassica carinata HOM05D000710 ORTHO05D000336 1.5e-06 58.2 238 26.1
PGSC0003DMG400040510 Solanum tuberosum HOM05D000710 ORTHO05D000336 1.5e-06 58.2 243 23.0
Haze_06779 Corylus avellana HOM05D002077 ORTHO05D000818 1.9e-06 57.8 54 38.9
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.9e-06 57.8 157 28.0
Lsat_1_v5_gn_7_32521 Lactuca sativa HOM05D000710 ORTHO05D000336 1.9e-06 57.8 242 25.2
Atru.chr2.2845 Acer truncatum HOM05D002077 ORTHO05D000818 2.5e-06 57.4 57 40.4
BcaB01g01969 Brassica carinata HOM05D000710 ORTHO05D000336 2.5e-06 57.4 244 22.1
Sopen08g002910 Solanum pennellii HOM05D000710 ORTHO05D000336 2.5e-06 57.4 246 23.6
Prupe.1G012700 Prunus persica HOM05D002273 ORTHO05D000818 4.3e-06 56.6 265 21.9
Solyc08g006940.4 Solanum lycopersicum HOM05D000710 ORTHO05D000336 5.6e-06 56.2 246 23.6
arahy.Tifrunner.gnm1.ann1.BCS63D Arachis hypogaea HOM05D002077 ORTHO05D000818 7.3e-06 55.8 157 28.0
BcaC04g23989 Brassica carinata HOM05D000710 ORTHO05D000336 7.3e-06 55.8 240 26.7
Lsat_1_v5_gn_6_61060 Lactuca sativa HOM05D002273 ORTHO05D000818 9.6e-06 55.5 264 22.3


User provided reference genes

Program Settings