Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.0e-226 788.9 421 100.0
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 7.7e-215 750.4 426 92.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.9e-214 748.4 426 91.1
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.5e-214 746.9 426 93.9
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.5e-207 724.9 426 91.5
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.7e-201 706.1 429 86.9
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.1e-200 701.8 426 89.2
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.1e-197 693.3 429 84.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.2e-197 690.6 429 84.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.0e-195 686.8 431 86.1
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.2e-195 684.5 435 84.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.2e-194 683.3 422 84.4
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.5e-194 682.9 424 86.6
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 2.0e-191 672.5 426 85.0
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.7e-191 672.2 432 82.2
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 3.8e-190 668.3 419 83.5
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.9e-189 666.0 428 82.0
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 7.3e-189 664.1 426 82.2
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 9.5e-189 663.7 430 81.4
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.8e-188 662.1 429 82.5
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 6.1e-188 661.0 429 80.7
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.4e-187 659.8 432 82.2
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.4e-186 654.8 461 76.4
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.3e-185 653.3 432 83.6
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.9e-185 652.1 449 78.6
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 8.3e-185 650.6 408 83.3
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 8.3e-185 650.6 408 83.3
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 8.3e-185 650.6 413 84.5
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 8.3e-185 650.6 433 81.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.4e-184 649.8 408 83.1
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.4e-184 649.8 408 83.1
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.4e-184 649.8 408 83.1
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 5.4e-184 647.9 417 84.7
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 7.0e-184 647.5 431 78.9
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.6e-183 646.4 434 79.5
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.0e-183 646.0 409 82.9
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.0e-183 646.0 413 82.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.5e-183 645.2 435 81.1
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.9e-182 641.7 430 79.8
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 8.6e-182 640.6 424 79.5
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.1e-181 640.2 412 79.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.1e-181 640.2 427 82.7
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 3.3e-181 638.6 432 78.5
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 4.3e-181 638.3 430 80.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 7.3e-181 637.5 426 81.0
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 7.3e-181 637.5 435 83.0
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 9.5e-181 637.1 428 79.0
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.2e-180 636.7 413 81.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.6e-180 636.3 432 78.0
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.6e-180 636.3 432 78.0
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.6e-180 636.3 426 78.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.1e-180 636.0 432 81.9
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.8e-180 635.6 413 81.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.8e-180 635.6 434 80.0
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.1e-179 633.6 414 81.2
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 2.3e-179 632.5 428 79.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.0e-178 629.4 432 77.5
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 2.6e-178 629.0 409 81.2
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.6e-178 629.0 416 78.8
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 9.8e-178 627.1 426 77.0
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 9.8e-178 627.1 426 77.5
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.3e-177 626.7 418 77.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.7e-177 626.3 413 80.1
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 4.9e-177 624.8 426 76.5
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.4e-176 622.5 441 75.7
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.1e-176 621.7 424 77.4
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 7.0e-176 620.9 429 75.8
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 6.0e-175 617.8 472 72.7
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 6.0e-175 617.8 412 78.4
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 2.3e-174 615.9 424 76.7
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 6.6e-174 614.4 415 79.0
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 6.6e-174 614.4 416 78.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.9e-173 612.8 420 76.7
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.3e-173 612.1 449 75.1
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 7.3e-173 610.9 427 75.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.2e-172 610.1 430 75.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.8e-172 609.0 426 75.6
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 4.7e-172 608.2 427 75.6
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 8.1e-172 607.4 415 79.0
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.3e-171 605.9 426 77.9
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.3e-171 605.9 393 79.9
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.1e-171 605.5 426 77.7
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 4.0e-171 605.1 437 75.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.5e-170 603.2 424 74.8
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.9e-168 596.3 422 74.6
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.2e-168 595.5 380 80.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 5.4e-168 594.7 420 74.3
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-167 593.6 467 70.9
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.1e-167 592.8 434 73.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.7e-167 592.4 443 73.8
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 3.5e-167 592.0 424 73.6
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.5e-165 586.6 410 80.5
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 5.6e-165 584.7 432 78.0
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.8e-164 582.4 415 73.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 4.7e-164 581.6 431 71.9
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-163 579.7 423 75.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-162 575.9 374 86.6
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.1e-160 570.5 432 72.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-159 566.2 421 71.5
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.5e-159 565.5 513 62.0
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.9e-157 559.7 426 73.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-157 559.3 472 66.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 7.3e-157 557.8 489 69.3
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 9.6e-157 557.4 413 70.5
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 8.1e-156 554.3 379 82.3
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 8.1e-156 554.3 425 72.0
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.4e-155 552.7 521 64.3
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 7.6e-154 547.7 432 70.1
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.3e-153 547.0 392 74.7
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.7e-150 536.6 426 69.7
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.6e-148 530.0 388 76.5
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.7e-145 520.0 425 67.3
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 3.9e-142 508.8 417 66.2
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.6e-135 486.9 416 64.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.5e-133 480.3 405 63.0
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 8.2e-132 474.6 438 59.4
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.0e-130 469.9 370 70.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.2e-129 466.5 398 67.8
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.9e-129 466.1 423 64.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.1e-128 464.2 324 79.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.3e-123 445.3 397 62.2
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.0e-122 443.4 426 58.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.0e-122 443.4 430 61.4
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 5.9e-122 441.8 413 58.4
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 3.8e-121 439.1 340 70.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.2e-112 409.5 433 53.8
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.5e-106 389.0 353 61.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.8e-70 270.8 216 66.2
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 5.0e-65 252.7 371 41.0
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 5.4e-59 232.6 415 35.7
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 9.6e-40 168.7 209 56.0
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.0e-29 134.4 84 79.8
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.0e-17 95.5 46 95.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.0e-17 95.5 46 95.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.8e-17 94.7 55 81.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.7e-09 66.2 53 67.9


User provided reference genes

Program Settings