Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 5.8e-65 250.8 127 100.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 5.1e-53 211.1 134 84.3
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.2e-48 195.7 134 79.1
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-47 193.4 134 78.4
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.1e-47 193.4 134 78.4
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 3.0e-21 105.5 137 51.1
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 6.7e-21 104.4 132 52.3
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 6.9e-18 94.4 132 50.0
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 8.5e-16 87.4 133 48.9
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.2e-14 83.6 97 51.5
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 3.6e-14 82.0 133 44.4
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 4.6e-14 81.6 139 44.6
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 7.9e-14 80.9 142 42.3
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.4e-13 80.1 130 39.2
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.4e-13 80.1 127 40.2
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.8e-13 79.7 134 47.0
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 2.3e-13 79.3 100 49.0
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 3.9e-13 78.6 105 42.9
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 3.9e-13 78.6 121 44.6
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 3.9e-13 78.6 102 47.1
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 6.7e-13 77.8 136 39.0
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 8.8e-13 77.4 128 43.8
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 8.8e-13 77.4 98 44.9
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 1.1e-12 77.0 107 46.7
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.1e-12 77.0 109 48.6
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.5e-12 76.6 97 46.4
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 3.3e-12 75.5 129 44.2
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 3.3e-12 75.5 131 43.5
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 3.3e-12 75.5 131 43.5
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 4.3e-12 75.1 101 47.5
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 4.3e-12 75.1 108 47.2
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 5.7e-12 74.7 100 45.0
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 9.7e-12 73.9 123 41.5
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 9.7e-12 73.9 102 48.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.3e-11 73.6 133 39.8
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.3e-11 73.6 99 46.5
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 1.7e-11 73.2 141 39.7
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-11 72.8 110 44.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.2e-11 72.8 99 42.4
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 2.8e-11 72.4 95 45.3
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 3.7e-11 72.0 106 42.5
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.7e-11 72.0 86 46.5
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 3.7e-11 72.0 121 38.8
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.8e-11 71.6 138 39.1
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 4.8e-11 71.6 94 44.7
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 4.8e-11 71.6 138 40.6
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 4.8e-11 71.6 94 50.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 6.3e-11 71.2 145 38.6
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 6.3e-11 71.2 99 44.4
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 8.2e-11 70.9 96 47.9
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 8.2e-11 70.9 133 41.4
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.1e-10 70.5 92 44.6
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.1e-10 70.5 92 44.6
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.4e-10 70.1 94 43.6
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.4e-10 70.1 104 43.3
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.4e-10 70.1 147 40.1
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.4e-10 70.1 131 37.4
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.8e-10 69.7 95 48.4
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.8e-10 69.7 92 46.7
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.4e-10 69.3 102 43.1
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 2.4e-10 69.3 121 40.5
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 2.4e-10 69.3 94 45.7
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 4.1e-10 68.6 146 37.7
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.1e-10 68.6 94 44.7
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.3e-10 68.2 126 38.9
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 6.9e-10 67.8 87 43.7
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 6.9e-10 67.8 126 38.1
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.2e-09 67.0 97 45.4
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.2e-09 67.0 89 48.3
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 1.5e-09 66.6 130 38.5
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.5e-09 66.6 93 46.2
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-09 66.6 94 44.7
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.0e-09 66.2 89 47.2
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.0e-09 66.2 140 43.6
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 2.6e-09 65.9 94 45.7
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.6e-09 65.9 86 46.5
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 2.6e-09 65.9 122 35.2
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 2.6e-09 65.9 95 41.1
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 3.4e-09 65.5 136 34.6
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 3.4e-09 65.5 95 43.2
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 4.5e-09 65.1 87 48.3
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 5.9e-09 64.7 100 44.0
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 5.9e-09 64.7 89 49.4
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.0e-08 63.9 104 43.3
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.0e-08 63.9 94 41.5
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.0e-08 63.9 93 45.2
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.3e-08 63.5 130 39.2
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-08 63.5 89 46.1
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.7e-08 63.2 93 43.0
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.7e-08 63.2 115 39.1
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.2e-08 62.8 138 37.7
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-08 62.8 130 39.2
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 2.2e-08 62.8 130 39.2
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 2.2e-08 62.8 78 50.0
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.9e-08 62.4 97 44.3
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 3.8e-08 62.0 81 48.1
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 3.8e-08 62.0 95 43.2
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 5.0e-08 61.6 89 44.9
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.0e-08 61.6 89 44.9
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 6.5e-08 61.2 95 44.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 6.5e-08 61.2 108 38.0
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-07 60.5 95 43.2
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-07 60.5 93 41.9
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 1.9e-07 59.7 87 43.7
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 1.9e-07 59.7 93 40.9
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 1.9e-07 59.7 94 41.5
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 3.2e-07 58.9 87 40.2
Solyc02g080550.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 7.2e-07 57.8 82 42.7
Sopen02g025250 Solanum pennellii HOM05D011575 ORTHO05D004912 9.4e-07 57.4 82 41.5
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.2e-06 57.0 83 44.6
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 2.7e-06 55.8 79 44.3
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 3.6e-06 55.5 92 39.1
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 6.1e-06 54.7 80 45.0
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 6.1e-06 54.7 146 32.2
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 6.1e-06 54.7 86 39.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 7.9e-06 54.3 85 41.2


User provided reference genes

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