Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 4.5e-308 1060.4 548 100.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 8.3e-270 933.3 548 88.7
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 8.4e-262 906.7 548 85.0
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.2e-260 902.9 548 84.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 2.7e-260 901.7 549 84.5
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.3e-259 899.4 548 84.5
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.5e-226 788.9 555 74.8
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 9.0e-224 780.4 556 75.2
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 4.5e-223 778.1 553 74.3
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 5.9e-223 777.7 549 73.2
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.1e-221 773.5 533 74.3
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.4e-221 773.1 549 74.1
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 2.7e-220 768.8 549 72.5
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 7.9e-220 767.3 555 72.6
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.8e-219 766.1 543 73.1
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 6.7e-219 764.2 549 72.1
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 2.2e-217 759.2 553 73.4
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 4.1e-216 755.0 527 74.6
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 4.1e-216 755.0 497 77.7
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.2e-215 753.4 532 74.4
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 7.7e-215 750.7 549 71.4
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 9.4e-213 743.8 560 72.0
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 5.1e-211 738.0 471 77.7
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.0e-210 736.1 554 69.7
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 2.2e-209 732.6 552 71.0
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 4.8e-209 731.5 554 69.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.1e-208 730.3 554 68.2
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 5.3e-208 728.0 578 68.7
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 9.1e-208 727.2 544 69.1
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.5e-207 726.5 516 70.9
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 2.6e-207 725.7 554 68.8
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 1.7e-206 723.0 539 69.0
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 2.2e-206 722.6 555 67.4
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 2.9e-206 722.2 544 69.5
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 6.5e-206 721.1 503 72.8
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.1e-205 720.3 555 68.8
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 1.9e-205 719.5 543 66.7
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 3.2e-205 718.8 525 70.3
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 5.5e-205 718.0 473 75.9
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 7.2e-205 717.6 553 66.2
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 3.6e-204 715.3 497 72.4
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.1e-202 710.3 544 68.4
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 3.3e-202 708.8 542 67.9
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 1.7e-201 706.4 534 67.8
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 6.3e-201 704.5 467 73.7
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.4e-200 702.6 544 65.4
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 5.3e-200 701.4 475 74.5
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.5e-199 698.7 504 70.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 4.5e-199 698.4 566 64.8
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 5.9e-199 698.0 530 70.0
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 1.3e-198 696.8 499 71.7
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.3e-198 696.8 527 67.4
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 1.7e-198 696.4 543 65.9
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 7.2e-197 691.0 493 70.0
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 7.2e-197 691.0 467 73.7
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 9.4e-197 690.6 551 65.5
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 1.6e-196 689.9 479 70.8
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 2.1e-196 689.5 551 67.2
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 4.7e-196 688.3 545 66.4
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 5.2e-195 684.9 550 63.5
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 6.8e-195 684.5 552 63.0
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 6.8e-195 684.5 459 73.6
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 1.3e-193 680.2 551 62.3
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 4.8e-193 678.3 443 74.7
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 4.8e-193 678.3 526 66.3
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 1.8e-192 676.4 552 61.8
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 1.2e-191 673.7 440 74.8
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.2e-191 673.7 474 69.0
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 1.2e-191 673.7 481 68.4
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 7.7e-191 671.0 549 61.9
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 1.0e-190 670.6 550 62.9
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.5e-189 666.8 496 65.7
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.2e-189 664.5 555 65.2
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 3.6e-188 662.1 554 61.7
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 8.0e-188 661.0 470 70.9
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.8e-187 659.8 550 61.6
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 6.8e-187 657.9 519 63.4
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.5e-186 656.8 561 60.8
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.5e-186 656.8 551 62.1
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 1.4e-184 650.2 564 59.4
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 3.1e-184 649.0 546 62.1
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 3.5e-183 645.6 552 61.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 3.5e-183 645.6 546 61.7
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 3.3e-181 639.0 533 65.9
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 5.5e-181 638.3 459 69.3
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 1.2e-175 620.5 534 60.7
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 2.3e-174 616.3 535 60.0
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 3.3e-173 612.5 540 62.2
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.2e-172 610.5 508 60.4
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 3.6e-172 609.0 443 67.7
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 6.1e-172 608.2 496 62.9
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.7e-166 590.1 507 59.8
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.6e-164 583.6 499 60.1
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 7.5e-162 574.7 453 61.8
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 1.1e-155 554.3 475 63.2
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 4.7e-148 528.9 488 58.6
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 4.0e-147 525.8 373 70.8
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.6e-146 523.1 472 59.7
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 1.1e-141 507.7 391 63.4
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 8.1e-140 501.5 477 52.2
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.6e-135 485.7 390 66.4
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.3e-133 479.6 376 64.6
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.0e-130 470.3 474 50.0
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 5.8e-130 468.8 456 50.9
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.4e-128 464.2 545 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 5.6e-125 452.2 468 48.7
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.5e-122 444.1 395 62.8
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 7.6e-122 441.8 472 46.6
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 4.1e-115 419.5 438 46.6
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 9.8e-77 292.0 464 34.3
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 3.4e-69 266.9 427 35.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 1.6e-58 231.5 383 42.3
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 2.6e-53 214.2 134 76.1
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.8e-47 194.1 136 69.1
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 4.9e-44 183.3 156 64.7
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.1e-42 177.9 107 82.2
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 4.7e-39 166.8 272 40.8
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 1.7e-33 148.3 492 23.8
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 7.1e-27 126.3 92 65.2
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.7e-26 124.4 114 62.3
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.7e-25 121.7 94 69.1
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 7.3e-24 116.3 68 77.9
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 5.3e-22 110.2 208 35.1
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 3.4e-21 107.5 195 35.4
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.9e-19 101.7 220 32.3
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.4e-19 101.3 120 50.8
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 5.3e-14 83.6 80 57.5
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 6.4e-12 76.6 440 20.9
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 3.9e-09 67.4 63 50.8
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 2.4e-06 58.2 61 52.5
BraA02t07229Z Brassica rapa HOM05D011432 ORTHO05D014939 9.0e-06 56.2 40 55.0


User provided reference genes

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