Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.4e-208 729.9 530 100.0
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.3e-147 526.6 529 78.3
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 3.0e-147 526.2 529 77.9
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.3e-146 522.3 529 77.3
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 1.3e-123 447.6 493 76.9
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 8.7e-123 444.9 493 76.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.2e-113 413.7 528 66.9
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 5.9e-111 405.6 528 67.8
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 8.5e-110 401.7 480 70.2
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.2e-109 399.4 516 68.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.6e-108 396.0 516 67.8
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.0e-107 394.8 516 67.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 5.1e-107 392.5 530 67.9
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 5.1e-107 392.5 516 67.6
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.1e-107 392.5 516 67.6
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 8.7e-107 391.7 516 67.4
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 2.2e-105 387.1 485 72.4
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.8e-105 386.7 517 67.9
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 4.5e-103 379.4 540 63.5
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.9e-101 374.0 530 67.2
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.8e-99 367.5 521 64.7
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.5e-98 364.4 482 66.0
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 2.6e-98 363.6 482 68.5
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.3e-98 363.2 381 79.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 4.8e-97 359.4 480 69.8
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 4.8e-97 359.4 480 69.8
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 4.8e-97 359.4 532 66.2
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 8.2e-97 358.6 535 65.6
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.4e-96 357.8 495 69.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.4e-96 357.8 495 69.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.4e-96 357.8 495 69.5
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 2.4e-96 357.1 524 66.8
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 4.1e-96 356.3 486 68.1
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.9e-96 355.5 480 69.4
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.2e-95 354.8 485 68.2
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.0e-95 354.0 496 62.9
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 7.7e-95 352.1 485 68.7
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.3e-94 351.3 481 67.6
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.7e-94 350.9 479 64.9
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 3.8e-94 349.7 483 68.9
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 3.8e-94 349.7 483 60.7
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.9e-93 347.4 535 65.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.2e-93 346.7 488 69.3
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.6e-92 344.4 503 65.2
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 2.7e-92 343.6 480 66.9
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 8.0e-92 342.0 362 77.1
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 8.8e-91 338.6 482 61.0
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 3.3e-90 336.7 522 63.6
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 9.7e-90 335.1 516 64.7
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 2.2e-89 334.0 520 65.8
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 6.3e-89 332.4 485 64.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 6.3e-89 332.4 488 63.3
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 8.2e-89 332.0 491 66.4
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.4e-88 331.3 477 61.0
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.8e-88 330.9 356 83.1
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.4e-88 330.5 479 65.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 7.0e-88 328.9 329 85.1
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 9.1e-88 328.6 477 64.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 3.5e-87 326.6 542 61.1
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.0e-86 325.1 534 60.5
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 1.0e-86 325.1 474 66.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.3e-86 324.7 480 65.6
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 6.5e-86 322.4 533 60.0
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 8.5e-86 322.0 489 65.6
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 8.5e-86 322.0 488 62.7
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 4.2e-85 319.7 472 66.3
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 6.1e-84 315.8 352 79.3
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.0e-83 315.1 487 62.0
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.4e-83 314.7 479 61.8
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 5.2e-83 312.8 357 77.9
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 5.2e-83 312.8 527 62.2
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.2e-82 311.6 517 62.3
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.5e-82 311.2 413 70.0
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 2.2e-81 307.4 482 62.9
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 7.0e-80 302.4 484 62.4
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.2e-79 301.6 527 57.9
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.5e-79 299.7 483 60.5
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.9e-78 297.0 483 61.7
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 3.8e-78 296.6 463 60.5
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 2.5e-77 293.9 528 58.9
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.2e-77 293.5 489 58.7
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 4.2e-77 293.1 483 62.9
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 5.5e-77 292.7 499 60.1
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 9.4e-77 292.0 485 60.0
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 1.0e-75 288.5 491 62.3
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.7e-73 281.2 293 87.4
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.9e-70 270.4 479 59.7
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.0e-67 261.9 478 64.0
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.4e-67 261.5 483 57.6
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 3.0e-67 260.4 499 58.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 4.0e-67 260.0 535 54.0
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 8.9e-67 258.8 482 55.4
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.0e-66 257.7 339 74.0
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 5.6e-61 239.6 340 70.0
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 2.8e-60 237.3 293 82.9
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.4e-58 229.9 432 56.9
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.4e-56 224.9 338 70.1
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 1.4e-51 208.4 237 55.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.8e-51 208.0 295 59.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 3.4e-50 203.8 293 75.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 2.5e-45 187.6 426 53.3
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.4e-43 181.8 320 50.3
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.2e-42 178.7 290 72.4
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 2.0e-42 177.9 118 89.0
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 3.4e-42 177.2 234 81.2
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 5.8e-42 176.4 321 63.9
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.3e-41 175.3 321 65.7
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.6e-37 159.8 481 28.7
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.8e-36 157.5 108 88.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.4e-32 145.2 235 77.0
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 5.2e-27 126.7 122 56.6
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 3.8e-25 120.6 281 33.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 6.0e-23 113.2 321 55.5
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 3.9e-22 110.5 323 53.6
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 5.6e-21 106.7 318 51.6
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.1e-19 100.9 313 52.1
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.7e-17 95.1 53 83.0
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 2.0e-10 71.6 124 48.4
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.9e-09 67.8 126 31.0
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 4.2e-08 63.9 292 23.6


User provided reference genes

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