Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G018300 Theobroma cacao HOM05D000121 ORTHO05D409591 1.8e-34 148.7 72 100.0
Nn1g07477 Nelumbo nucifera HOM05D000121 ORTHO05D000102 9.1e-07 56.6 35 77.1
Migut.M01669 Erythranthe guttata HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
Manes.03G138600 Manihot esculenta HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
Oeu044498.2 Olea europaea HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
QL09p018582 Quercus lobata HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
SalBow8G4930 Salvia bowleyana HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
SGA_v2.0_scaffold171G38884 Striga asiatica HOM05D000121 ORTHO05D000102 1.2e-06 56.2 35 77.1
THA.LOC104822740 Tarenaya hassleriana HOM05D000121 ORTHO05D000102 1.2e-06 56.2 36 72.2
ATR1101G013 Amborella trichopoda HOM05D000121 ORTHO05D000102 1.5e-06 55.8 35 77.1
Cfa020221 Carpinus fangiana HOM05D000121 ORTHO05D000102 1.5e-06 55.8 35 74.3
DCAR_017089 Daucus carota HOM05D000121 ORTHO05D000102 1.5e-06 55.8 35 74.3
Gohir.D11G287500 Gossypium hirsutum HOM05D000121 ORTHO05D000102 1.5e-06 55.8 36 69.4
Gorai.007G310800 Gossypium raimondii HOM05D000121 ORTHO05D000102 1.5e-06 55.8 36 69.4
unitig_899.g15273 Utricularia gibba HOM05D000121 ORTHO05D000102 1.5e-06 55.8 35 74.3
Zm00001eb336810 Zea mays HOM05D000121 ORTHO05D000102 1.5e-06 55.8 35 71.4
Aqoxy1G04231 Aquilegia oxysepala HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.8393AT Arachis hypogaea HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.E9Z217 Arachis hypogaea HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
BcaC01g04013 Brassica carinata HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
BcaC01g04014 Brassica carinata HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
BcaNung05269 Brassica carinata HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
A03p38050 Brassica napus HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 2.0e-06 55.5 35 74.3
C03p46170 Brassica napus HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
C03p46180 Brassica napus HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
BolC3t16889H Brassica oleracea HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
BraA03t12958Z Brassica rapa HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
Thhalv10019893m.g Eutrema salsugineum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
Gohir.A11G277000 Gossypium hirsutum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 33 72.7
Gohir.D11G287100 Gossypium hirsutum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 33 72.7
Manes.03G138528 Manihot esculenta HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
Manes.03G138650 Manihot esculenta HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
Nitab4.5_0000461g0130 Nicotiana tabacum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
Os01g0173900 Oryza sativa ssp. japonica HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 71.4
PSO210G2174 Papaver somniferum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
PSO210G4153 Papaver somniferum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
Peaxi162Scf00285g00821 Petunia axillaris HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
Sp3g11250 Schrenkiella parvula HOM05D000121 ORTHO05D000102 2.0e-06 55.5 35 74.3
Solyc07g065320.4 Solanum lycopersicum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
Sopen07g033520 Solanum pennellii HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
PGSC0003DMG400022183 Solanum tuberosum HOM05D000121 ORTHO05D000102 2.0e-06 55.5 32 81.2
Thecc.07G018600 Theobroma cacao HOM05D000121 ORTHO05D000102 2.0e-06 55.5 33 72.7
Aa31LG8G310 Aethionema arabicum HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 74.3
AL3G24820 Arabidopsis lyrata HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 74.3
AT3G13080 Arabidopsis thaliana HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 74.3
Carub.0003s1242 Capsella rubella HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 74.3
QL08p005205 Quercus lobata HOM05D000121 ORTHO05D000102 2.6e-06 55.1 32 78.1
SalBow8G4307 Salvia bowleyana HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 74.3
Sed0021072 Sechium edule HOM05D000121 ORTHO05D000102 2.6e-06 55.1 35 71.4
Sc10g0005690 Simmondsia chinensis HOM05D000121 ORTHO05D000102 2.6e-06 55.1 32 78.1
ATR1101G010 Amborella trichopoda HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 74.3
CSS0026803 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 71.4
AUR62016384 Chenopodium quinoa HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 68.6
ClCG09G021060 Citrullus lanatus HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 71.4
Ciclev10007266m.g Citrus clementina HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 71.4
MELO3C024902.2 Cucumis melo HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 71.4
CsaV3_7G018610 Cucumis sativus L. HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 71.4
DCAR_017091 Daucus carota HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 68.6
DCAR_024176 Daucus carota HOM05D000121 ORTHO05D000102 3.4e-06 54.7 35 68.6
Eucgr.F02083 Eucalyptus grandis HOM05D000121 ORTHO05D000102 3.4e-06 54.7 32 81.2
Gohir.D11G287200 Gossypium hirsutum HOM05D000121 ORTHO05D000102 3.4e-06 54.7 36 66.7
Gorai.007G310600 Gossypium raimondii HOM05D000121 ORTHO05D000102 3.4e-06 54.7 36 66.7
Phvul.008G142000 Phaseolus vulgaris HOM05D000121 ORTHO05D000102 3.4e-06 54.7 33 72.7
Actinidia05021 Actinidia chinensis HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
Actinidia05028 Actinidia chinensis HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 71.4
Cfa020222 Carpinus fangiana HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
CiPaw.11G201700 Carya illinoinensis HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 74.3
CiPaw.11G201800 Carya illinoinensis HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 74.3
AUR62011566 Chenopodium quinoa HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 68.6
AUR62011568 Chenopodium quinoa HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 68.6
AUR62016385 Chenopodium quinoa HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 68.6
COL.COLO4_13638 Corchorus olitorius HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
Gorai.007G310500 Gossypium raimondii HOM05D000121 ORTHO05D000102 4.5e-06 54.3 33 69.7
Oeu027994.1 Olea europaea HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 74.3
Prupe.4G235100 Prunus persica HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
Rhsim06G0227200 Rhododendron simsii HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
RcHm_v2.0_Chr4g0406811 Rosa chinensis HOM05D000121 ORTHO05D000102 4.5e-06 54.3 32 78.1
Sabra16G0238900 Salix brachista HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 71.4
TWI39G0296 Tripterygium wilfordii HOM05D000121 ORTHO05D000102 4.5e-06 54.3 35 74.3
BcaNung05268 Brassica carinata HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 5.9e-06 53.9 35 71.4
BraA03t12956Z Brassica rapa HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
Cpa.g.sc97.101 Carica papaya HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
Cc04_g15820 Coffea canephora HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
Haze_09792 Corylus avellana HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 74.3
Duzib213G0711 Durio zibethinus HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 75.0
Duzib268G0248 Durio zibethinus HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 75.0
Glyma.18G158400 Glycine max HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 78.1
LjContig00081g0020592 Lotus japonicus HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 78.1
Lalb_Chr10g0107331 Lupinus albus HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 78.1
QL08p005009 Quercus lobata HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 74.3
unitig_85.g27344 Utricularia gibba HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
HPP92_000662 Vanilla planifolia HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
HPP92_000684 Vanilla planifolia HOM05D000121 ORTHO05D000102 5.9e-06 53.9 35 71.4
VMungo0647G1375 Vigna mungo HOM05D000121 ORTHO05D000102 5.9e-06 53.9 32 78.1
CAN.G337.22 Capsicum annuum HOM05D000121 ORTHO05D000102 7.7e-06 53.5 32 78.1
Cpa.g.sc12.185 Carica papaya HOM05D000121 ORTHO05D000102 7.7e-06 53.5 35 71.4
Gohir.A11G277100 Gossypium hirsutum HOM05D000121 ORTHO05D000102 7.7e-06 53.5 33 69.7
Lalb_Chr17g0348811 Lupinus albus HOM05D000121 ORTHO05D000102 7.7e-06 53.5 35 71.4
QL08p005116 Quercus lobata HOM05D000121 ORTHO05D000102 7.7e-06 53.5 32 78.1
QL08p005130 Quercus lobata HOM05D000121 ORTHO05D000102 7.7e-06 53.5 32 78.1


User provided reference genes

Program Settings