Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-177 626.3 330 100.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 3.0e-158 562.0 330 88.8
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.0e-149 532.7 331 84.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-146 523.1 330 82.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.8e-146 520.8 330 82.7
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-145 518.8 330 82.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.9e-145 518.5 336 81.2
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.0e-142 508.4 336 80.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.8e-133 478.0 330 78.5
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.9e-128 463.0 335 72.5
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 6.4e-124 448.0 333 71.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.6e-122 441.8 333 71.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.0e-122 441.4 330 70.3
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 7.8e-122 441.0 330 70.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.1e-120 437.2 334 68.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.9e-120 436.4 333 71.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.1e-119 433.0 330 70.9
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 5.3e-118 428.3 334 68.9
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 9.9e-117 424.1 328 68.6
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.7e-116 423.3 334 67.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 4.2e-115 418.7 331 68.6
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.5e-112 409.5 333 67.6
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 3.3e-112 409.1 329 67.2
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 7.3e-112 407.9 333 64.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.3e-111 407.1 333 65.5
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 6.2e-111 404.8 274 75.5
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.1e-110 404.1 335 65.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.8e-110 403.3 334 63.2
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.4e-110 402.9 333 62.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 3.1e-110 402.5 333 64.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.5e-109 398.7 343 65.6
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.4e-107 392.9 334 64.1
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.2e-107 392.1 333 63.1
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.4e-107 391.7 333 62.8
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 5.4e-107 391.7 336 66.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 9.3e-107 391.0 335 63.6
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.1e-106 389.8 331 63.4
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.9e-105 385.6 333 62.5
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.9e-105 385.6 326 63.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 6.7e-105 384.8 332 63.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.7e-105 384.4 329 65.0
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.5e-104 383.6 333 59.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 4.3e-104 382.1 335 61.5
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 9.6e-104 380.9 334 62.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 9.6e-104 380.9 334 61.7
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-103 379.4 333 62.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.7e-103 379.0 333 61.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-102 377.5 334 61.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.8e-102 376.7 333 61.6
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.4e-102 376.3 332 63.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.9e-102 374.8 334 62.9
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.5e-101 373.6 278 70.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.0e-101 373.2 335 60.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-101 373.2 335 62.7
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.8e-101 371.7 334 62.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 5.8e-101 371.7 333 60.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.7e-100 370.2 339 59.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.9e-100 369.4 282 67.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.9e-100 368.6 326 63.2
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.2e-99 365.9 333 56.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.2e-99 365.9 336 58.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-99 365.5 331 56.8
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 4.2e-99 365.5 386 54.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 5.5e-99 365.2 335 60.9
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.6e-98 363.6 333 56.2
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-98 363.6 331 57.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 3.5e-98 362.5 335 59.7
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 4.6e-98 362.1 338 60.7
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 4.6e-98 362.1 338 60.7
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 4.6e-98 362.1 338 60.7
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.0e-98 361.7 378 57.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.0e-98 361.7 332 59.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.3e-97 359.8 334 61.4
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.1e-97 358.6 341 56.3
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.9e-96 356.7 336 59.2
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.3e-95 354.0 340 58.2
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.6e-95 353.6 334 59.3
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.6e-95 353.6 338 60.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.6e-95 353.6 372 57.3
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.1e-95 353.2 336 60.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-95 352.8 271 66.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 3.7e-95 352.4 340 60.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.7e-95 352.4 338 60.1
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.8e-94 350.1 338 59.2
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.4e-94 349.7 331 61.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-93 347.4 338 57.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-93 347.4 338 57.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.6e-93 346.3 337 59.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.5e-93 345.5 330 57.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.0e-92 344.4 335 60.3
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.7e-92 343.6 332 56.9
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 5.0e-92 342.0 334 59.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.4e-91 340.5 336 55.7
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.5e-91 339.7 336 56.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.5e-91 339.7 331 59.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.5e-91 339.7 363 56.5
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 7.1e-91 338.2 340 58.5
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.2e-90 337.4 336 55.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.3e-89 334.0 341 58.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-88 330.9 279 63.4
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.5e-88 329.7 341 58.7
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.3e-88 328.9 321 53.9
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.2e-87 326.6 341 58.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 2.2e-87 326.6 331 58.9
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.7e-87 325.9 345 53.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.3e-87 325.1 330 54.2
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.8e-86 323.6 247 71.7
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.2e-85 320.9 339 51.0
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.2e-85 320.9 327 57.2
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.5e-85 320.5 340 51.8
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-85 319.7 349 55.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 7.7e-85 318.2 332 55.7
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 7.7e-85 318.2 323 55.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.2e-84 316.6 371 54.4
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.8e-84 315.8 339 50.1
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.5e-84 314.7 339 49.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-83 314.3 323 55.4
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.2e-83 312.4 333 52.9
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 7.2e-83 311.6 327 52.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.6e-82 308.9 340 50.6
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 7.9e-82 308.1 332 52.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.9e-81 305.8 307 55.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.9e-81 305.8 249 66.3
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.1e-80 304.3 334 55.1
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.0e-80 303.5 327 52.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.7e-80 302.0 327 51.4
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.1e-78 296.2 218 70.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-77 293.9 201 78.6
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-77 293.1 297 56.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 6.5e-76 288.5 325 52.6
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.2e-75 286.2 329 51.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.4e-75 284.6 201 75.1
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-74 283.5 201 77.6
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.0e-73 279.6 312 55.1
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.0e-72 276.9 317 54.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-70 270.4 240 58.8
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.2e-69 267.7 232 63.4
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.7e-69 265.0 332 48.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.7e-68 263.8 309 52.8
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.4e-67 258.1 186 72.6
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 6.5e-60 235.3 255 54.5
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.7e-58 229.9 208 64.9
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 8.0e-58 228.4 165 73.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.0e-57 228.0 323 46.7
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.5e-53 213.0 329 44.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 8.5e-52 208.4 178 62.4
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.5e-51 207.6 328 43.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.6e-50 203.0 234 47.9
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-49 200.7 163 62.6
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.1e-46 189.9 132 74.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.3e-44 183.7 242 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 5.0e-44 182.6 230 46.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.5e-43 179.1 147 57.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.2e-40 171.4 97 89.7
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.0e-40 170.6 129 64.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.7e-37 160.2 173 53.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.6e-36 155.2 205 55.1
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-34 151.4 135 54.8
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.4e-32 143.3 148 55.4
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.1e-30 138.3 214 43.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 5.4e-30 136.0 138 52.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.3e-28 131.3 126 54.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.9e-23 112.8 219 35.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 6.4e-23 112.5 104 54.8
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-17 94.0 304 31.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.7e-13 80.5 90 48.9
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.5e-13 80.1 141 37.6
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.0e-12 78.6 62 59.7
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 3.9e-12 76.6 60 70.0
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 5.6e-11 72.8 257 29.2
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 4.4e-08 63.2 50 62.0


User provided reference genes

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