Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 3.2e-123 445.3 251 100.0
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 1.0e-52 211.1 261 62.5
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.5e-35 154.1 263 49.0
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.5e-35 153.3 263 48.3
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.2e-29 134.4 261 42.5
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 5.0e-28 129.0 250 45.2
COL.COLO4_09821 Corchorus olitorius HOM05D005849 ORTHO05D004704 8.0e-26 121.7 226 47.8
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.7e-24 115.5 215 45.6
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 9.8e-24 114.8 235 42.6
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 9.8e-24 114.8 235 42.6
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 4.1e-22 109.4 243 37.0
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 5.4e-22 109.0 235 43.0
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.6e-21 107.5 235 42.1
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 4.5e-21 105.9 233 38.6
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 7.7e-21 105.1 246 39.0
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.3e-20 104.4 228 38.6
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 1.3e-20 104.4 227 41.9
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.7e-20 104.0 228 39.9
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 1.7e-20 104.0 243 38.3
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 6.6e-20 102.1 244 38.9
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 8.6e-20 101.7 246 37.4
Cfa020199 Carpinus fangiana HOM05D005849 ORTHO05D004704 4.3e-19 99.4 219 43.8
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 4.3e-19 99.4 231 39.4
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 7.3e-19 98.6 257 35.4
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 1.6e-18 97.4 258 35.7
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 3.6e-18 96.3 274 33.9
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 8.0e-18 95.1 239 34.7
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 8.0e-18 95.1 241 38.6
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 1.4e-17 94.4 185 37.8
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 2.3e-17 93.6 257 35.4
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.3e-17 93.6 171 42.1
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 6.8e-17 92.0 240 35.4
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.2e-16 91.3 264 34.1
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.6e-16 90.1 255 34.9
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 4.4e-16 89.4 272 37.5
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 5.7e-16 89.0 173 40.5
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 7.5e-16 88.6 235 37.0
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 9.8e-16 88.2 166 45.2
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 1.3e-15 87.8 232 35.3
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.7e-15 87.4 253 34.4
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.7e-15 87.4 235 37.0
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.9e-15 86.7 235 36.6
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 2.9e-15 86.7 235 34.5
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.7e-15 86.3 260 35.8
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 8.3e-15 85.1 236 39.8
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 8.3e-15 85.1 238 35.3
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.4e-14 84.3 238 34.9
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.8e-14 84.0 235 34.9
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.2e-13 81.3 238 34.9
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-13 81.3 238 34.9
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 1.6e-13 80.9 242 35.5
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 2.7e-13 80.1 248 34.3
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 7.8e-13 78.6 182 39.6
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 1.0e-12 78.2 235 32.8
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 8.6e-12 75.1 265 33.2
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.1e-11 74.7 235 31.9
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.1e-11 74.7 151 39.1
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 1.5e-11 74.3 235 32.3
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.5e-11 73.6 236 34.3
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 3.3e-11 73.2 275 29.8
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 9.5e-11 71.6 139 42.4
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 9.5e-11 71.6 139 42.4
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.2e-10 71.2 129 42.6
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 1.6e-10 70.9 229 34.5
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 3.6e-10 69.7 250 32.0
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 3.6e-10 69.7 232 34.1
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 4.7e-10 69.3 127 43.3
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 4.7e-10 69.3 140 41.4
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 8.0e-10 68.6 237 32.5
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.8e-09 67.4 246 31.3
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 1.8e-09 67.4 97 48.5
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 4.0e-09 66.2 46 71.7
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 5.2e-09 65.9 233 33.0
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 6.8e-09 65.5 231 32.0
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.8e-09 65.5 234 33.3
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.5e-08 64.3 235 30.2
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.5e-08 64.3 243 31.3
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.0e-08 63.9 236 32.2
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 2.0e-08 63.9 189 31.2
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 2.0e-08 63.9 242 33.1
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 5.8e-08 62.4 223 30.5
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 5.8e-08 62.4 78 50.0
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 9.8e-08 61.6 212 35.8
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 9.8e-08 61.6 230 34.8
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 9.8e-08 61.6 233 32.6
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 9.8e-08 61.6 40 77.5
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 1.3e-07 61.2 125 39.2
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 1.7e-07 60.8 226 31.9
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 2.9e-07 60.1 253 32.0
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 2.9e-07 60.1 114 41.2
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 2.9e-07 60.1 231 30.7
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 3.7e-07 59.7 40 77.5
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 6.4e-07 58.9 214 31.3
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 8.3e-07 58.5 107 43.0
Glyma.14G013800 Glycine max HOM05D014115 ORTHO05D004704 1.1e-06 58.2 262 30.9
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 1.1e-06 58.2 96 42.7
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 1.9e-06 57.4 132 40.9
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.9e-06 57.4 116 38.8
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 2.4e-06 57.0 135 40.7
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 3.2e-06 56.6 133 37.6
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 4.1e-06 56.2 146 34.2
Phvul.008G278800 Phaseolus vulgaris HOM05D014115 ORTHO05D004704 5.4e-06 55.8 209 31.6


User provided reference genes

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