Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 0.0e+00 1688.7 960 100.0
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 0.0e+00 1301.2 965 75.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 0.0e+00 1140.2 965 70.6
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 0.0e+00 1130.5 967 70.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 0.0e+00 1122.1 967 70.1
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 0.0e+00 1117.1 967 71.1
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 2.2e-209 733.4 1005 51.3
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.0e-202 710.3 1002 48.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 1.4e-198 697.6 1001 49.3
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.1e-189 667.9 1026 47.7
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.9e-177 626.7 1005 46.3
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 5.5e-176 622.5 1010 44.9
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.4e-176 621.7 1005 46.1
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.1e-175 620.5 968 46.8
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 3.6e-175 619.8 872 50.0
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 4.7e-175 619.4 1002 47.2
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 6.1e-175 619.0 989 45.1
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 6.1e-167 592.4 990 46.3
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 3.1e-163 580.1 944 44.4
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.5e-160 571.2 956 46.3
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 9.8e-157 558.5 964 44.1
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.8e-157 558.5 987 43.2
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.4e-155 554.7 1036 42.0
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.4e-155 553.9 989 42.7
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.5e-154 550.1 930 44.4
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.5e-154 549.7 989 42.5
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.6e-153 545.8 980 41.6
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.5e-152 544.7 986 42.1
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 4.7e-151 539.7 1003 42.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 8.0e-151 538.9 924 43.2
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.0e-150 538.5 1004 41.7
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.6e-146 524.6 812 46.7
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 3.3e-144 516.9 1117 40.4
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 6.2e-143 512.7 993 39.4
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.0e-141 507.7 996 41.3
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.3e-140 505.0 872 46.0
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 3.7e-140 503.4 1000 40.4
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.9e-139 501.1 998 41.8
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 2.4e-139 500.7 983 41.3
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 7.0e-139 499.2 833 45.0
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 6.6e-137 492.7 991 42.6
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.9e-136 491.1 995 39.7
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 4.3e-136 490.0 989 40.5
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.1e-134 485.3 1025 39.2
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 6.8e-134 482.6 1010 39.6
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 3.7e-132 476.9 977 40.7
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 3.5e-130 470.3 1005 38.8
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 7.8e-130 469.2 999 40.5
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 5.1e-129 466.5 751 49.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 5.6e-128 463.0 1009 39.1
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.1e-127 461.1 1012 38.7
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.8e-127 460.7 981 38.9
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 2.8e-127 460.7 1004 40.2
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 3.6e-127 460.3 993 39.0
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.4e-126 458.4 1005 39.6
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.0e-126 456.8 981 39.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 1.5e-125 454.9 996 38.6
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 2.6e-125 454.1 1001 39.1
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.4e-125 453.8 983 39.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 3.4e-125 453.8 1024 38.9
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 9.9e-125 452.2 1001 41.2
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.4e-123 448.4 920 40.0
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 7.8e-122 442.6 1010 39.3
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.5e-120 437.6 987 41.3
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 2.5e-120 437.6 1034 38.7
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 1.4e-118 431.8 896 39.5
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 6.9e-118 429.5 1012 39.2
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 9.9e-117 425.6 981 38.7
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 9.9e-117 425.6 1018 38.1
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.9e-115 421.4 975 37.3
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 5.4e-115 419.9 1016 36.9
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 5.4e-115 419.9 903 39.3
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.6e-114 418.3 988 38.5
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.7e-114 417.5 981 36.9
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 3.0e-113 414.1 1021 38.3
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 3.9e-113 413.7 903 40.2
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.6e-113 412.9 1075 36.5
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 5.6e-112 409.8 1023 36.7
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 3.6e-111 407.1 1037 35.9
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.2e-106 392.1 1025 35.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 4.6e-106 390.2 983 38.5
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 4.6e-106 390.2 982 36.4
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.9e-104 384.8 837 39.2
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 8.1e-103 379.4 1050 37.0
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.8e-102 378.3 928 37.7
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 3.1e-102 377.5 993 35.0
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.5e-101 375.2 945 37.6
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 8.4e-100 369.4 1072 36.7
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 7.1e-99 366.3 984 37.6
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.7e-98 364.4 996 38.4
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.3e-97 361.3 922 36.1
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 7.4e-96 356.3 859 38.2
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 8.2e-95 352.8 823 37.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 2.4e-94 351.3 816 36.2
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 2.4e-94 351.3 909 36.9
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 6.9e-94 349.7 955 35.6
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.2e-93 349.0 839 36.1
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.3e-92 345.5 1048 34.5
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.3e-92 345.5 1004 33.7
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.9e-84 317.8 1004 33.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 4.2e-83 313.9 922 34.6
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 4.8e-79 300.4 1034 31.2
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.5e-77 295.4 1124 32.4
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.5e-77 293.9 981 32.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.7e-76 292.0 963 32.4
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 1.0e-73 282.7 669 37.8
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.2e-68 265.0 987 32.2
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 4.7e-66 257.3 970 32.6
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.1e-62 246.1 433 40.6
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.2e-61 242.7 425 40.7
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 2.0e-53 215.3 950 31.3
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 5.9e-53 213.8 143 76.2
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.3e-47 193.7 471 35.2
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.1e-46 193.0 143 69.2
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.6e-40 171.8 137 65.0
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 6.8e-33 147.1 157 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.7e-29 135.2 1107 26.7
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 3.5e-29 134.8 139 53.2
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.5e-27 129.4 162 48.1
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 8.0e-26 123.6 101 68.3
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 3.4e-24 118.2 98 65.3
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 7.5e-24 117.1 223 39.9
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 7.5e-24 117.1 1097 25.3
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 6.4e-23 114.0 235 36.6
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 1.3e-20 106.3 74 70.3
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 6.2e-18 97.4 143 46.2
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 8.1e-18 97.1 449 34.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 5.4e-14 84.3 188 33.0
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.7e-13 82.0 73 63.0
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 5.1e-12 77.8 60 75.0
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.3e-11 75.1 60 73.3
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 8.9e-09 67.0 84 56.0
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 7.6e-08 63.9 248 31.0
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 8.4e-07 60.5 43 51.2
MCO09G310 Micromonas commoda HOM05D005351 ORTHO05D006542 1.9e-06 59.3 172 27.3


User provided reference genes

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