Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.8e-222 775.0 410 100.0
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 5.2e-208 727.6 410 91.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.9e-200 700.3 409 87.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.5e-199 697.2 412 87.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-196 689.5 412 86.7
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.3e-195 685.6 420 85.2
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-194 681.0 410 83.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-193 679.5 410 82.9
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-193 678.3 410 82.9
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.9e-190 668.7 411 83.7
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.9e-189 666.0 409 83.1
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.4e-189 664.5 411 83.2
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.7e-188 662.1 410 82.4
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.5e-188 661.8 411 82.7
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.3e-187 659.1 411 82.2
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.3e-187 659.1 410 82.0
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.3e-187 659.1 410 82.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 5.1e-187 657.9 410 82.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.3e-186 655.2 410 81.2
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.5e-186 653.7 412 80.8
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-185 652.9 410 81.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 3.6e-185 651.7 416 80.8
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.0e-184 648.3 408 82.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 7.6e-183 644.0 415 80.0
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.3e-182 643.3 410 81.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 6.4e-182 641.0 417 80.3
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 8.4e-182 640.6 416 80.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 4.2e-181 638.3 411 80.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 7.1e-181 637.5 414 80.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 9.2e-181 637.1 413 79.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.0e-180 634.4 414 79.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 5.1e-179 631.3 410 79.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 6.6e-179 630.9 413 78.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 8.7e-179 630.6 421 77.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.7e-179 630.6 408 78.9
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.5e-178 629.8 408 79.4
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 9.6e-178 627.1 416 78.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.3e-177 626.7 433 76.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.1e-176 623.6 413 78.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.4e-176 622.5 408 78.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 9.0e-176 620.5 448 74.3
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.5e-175 619.8 415 78.3
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.0e-175 619.4 419 77.3
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 5.8e-175 617.8 413 78.0
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 5.8e-175 617.8 412 77.2
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.6e-175 617.5 410 77.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 9.9e-175 617.1 410 77.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.9e-174 615.5 411 77.9
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-174 615.5 421 75.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.9e-174 615.5 413 76.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.4e-174 614.4 408 78.4
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 6.4e-174 614.4 410 76.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.4e-174 614.0 412 77.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.1e-173 613.6 425 75.8
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.9e-173 612.8 431 75.2
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.2e-173 612.1 406 77.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.4e-173 611.3 421 75.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 7.1e-173 610.9 412 76.9
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 9.3e-173 610.5 415 75.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 9.3e-173 610.5 410 76.6
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.7e-172 609.0 413 74.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.7e-172 609.0 411 77.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 6.0e-172 607.8 412 76.2
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 7.8e-172 607.4 410 76.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.0e-171 607.1 416 75.5
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.7e-171 606.3 417 76.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.7e-171 606.3 412 76.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.3e-171 605.9 441 72.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.0e-171 605.5 410 76.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.5e-170 602.4 415 74.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-170 602.4 441 71.9
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.3e-170 600.9 413 76.3
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.6e-169 598.6 413 75.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.1e-168 597.0 359 85.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.1e-168 595.5 411 74.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.0e-168 595.1 415 73.7
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.0e-168 594.0 424 72.4
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 9.0e-168 594.0 412 72.8
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.4e-167 592.0 410 76.6
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 3.4e-167 592.0 415 73.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 4.5e-167 591.7 419 74.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 4.5e-167 591.7 412 75.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 5.8e-167 591.3 412 75.0
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.3e-166 590.1 407 75.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.9e-166 589.0 413 74.6
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.9e-166 589.0 420 73.8
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 3.8e-166 588.6 422 73.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.8e-166 588.6 414 74.2
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.9e-166 588.2 414 74.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 414 75.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.1e-164 582.8 335 88.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-162 576.6 414 73.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 3.3e-162 575.5 414 72.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.6e-162 574.7 409 72.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.1e-161 572.8 409 72.9
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.8e-160 569.7 390 74.4
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.8e-160 569.7 412 73.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.0e-160 568.5 417 72.9
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.6e-159 565.8 360 79.4
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.6e-159 565.8 360 79.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.4e-159 565.5 346 82.4
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.8e-158 562.0 416 71.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 7.1e-157 557.8 410 73.2
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.7e-155 551.2 411 72.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.2e-149 532.3 414 67.9
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.8e-147 526.6 478 63.4
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.8e-147 526.6 478 63.4
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.8e-145 518.5 315 82.5
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.2e-141 505.8 334 76.9
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.1e-140 503.1 419 66.1
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.2e-134 483.0 357 71.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 9.4e-133 477.6 416 59.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.5e-127 459.1 424 55.4
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 7.7e-119 431.4 429 58.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.7e-116 422.9 271 79.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.8e-115 418.3 408 58.3
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 3.4e-114 416.0 383 56.1
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.6e-106 389.8 324 67.0
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.0e-102 377.9 337 62.3
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.0e-99 367.9 359 60.7
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.3e-86 324.3 419 46.1
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 7.3e-85 318.5 317 53.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.3e-81 305.1 246 66.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.8e-76 290.0 420 40.7
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.1e-67 261.5 469 35.2
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.6e-66 256.9 466 37.6
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.4e-64 250.4 325 44.3
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.8e-60 236.1 126 88.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.0e-59 231.9 315 43.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-56 223.8 145 78.6
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 7.6e-50 202.2 335 37.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.8e-49 199.9 328 37.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.7e-46 189.1 101 88.1
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-45 187.6 101 87.1
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.5e-41 172.6 131 67.9
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 8.4e-41 172.2 101 83.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.8e-35 154.5 94 83.0
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.2e-32 142.5 115 67.8
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.3e-27 126.3 129 55.8
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.7e-23 114.0 58 84.5
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.7e-23 114.0 65 86.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.1e-19 100.5 133 49.6
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.7e-18 95.9 71 70.4
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.2e-16 90.1 101 47.5
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 4.2e-16 90.1 97 52.6
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.5e-13 81.6 60 71.7
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.4e-11 75.1 96 43.8
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-11 74.3 42 85.7
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.2e-09 67.8 48 66.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.5e-09 65.9 54 63.0
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.9e-08 64.7 44 72.7
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 4.2e-08 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 9.4e-08 62.4 57 59.6
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 9.4e-08 62.4 43 65.1
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 2.1e-07 61.2 64 57.8
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 4.7e-07 60.1 60 60.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-06 58.9 36 77.8
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-06 58.9 36 77.8
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-06 58.9 36 77.8
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 4.0e-06 57.0 36 77.8
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.2e-06 56.6 55 58.2
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-06 56.2 120 27.5


User provided reference genes

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