Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 3538.8 1779 100.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 3202.1 1751 92.2
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 3179.0 1718 93.4
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 3135.9 1751 90.9
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 3083.9 1676 92.8
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 3007.2 1764 85.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2961.8 1764 84.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2937.9 1769 83.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2925.2 1768 82.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2914.0 1765 82.3
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2912.9 1766 82.5
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2903.6 1764 81.5
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2889.0 1766 81.8
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2887.1 1764 81.3
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2879.7 1765 80.8
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2869.7 1765 81.5
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2866.6 1766 80.6
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2858.9 1764 80.7
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2855.9 1766 81.0
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2853.9 1765 80.3
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2851.6 1764 80.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2847.0 1766 80.0
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2842.8 1766 80.0
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2838.9 1766 79.9
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2837.0 1766 79.8
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2835.1 1764 80.1
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2825.8 1781 79.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2792.7 1803 79.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2788.8 1873 75.7
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2787.7 1920 73.5
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2785.0 1783 78.5
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2768.0 1766 77.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2765.7 1766 77.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2763.8 1767 77.2
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2754.9 1766 77.0
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2741.8 1767 76.7
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2740.7 1766 76.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2737.2 1767 76.7
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2737.2 1766 76.9
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2736.1 1766 76.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2733.4 1703 79.6
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2719.1 1766 76.1
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2714.9 1766 76.4
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2714.1 1766 76.7
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2703.3 1777 76.4
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2702.2 1765 76.4
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2700.2 1767 76.1
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2699.8 1767 76.5
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2699.1 1767 76.1
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2697.5 1766 75.5
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2692.9 1848 73.1
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2686.4 1767 75.9
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2686.0 1767 75.8
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2685.6 1765 75.6
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2682.5 1767 75.7
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2679.8 1767 75.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2679.4 1768 75.7
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2675.6 1767 75.7
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2674.4 1765 75.9
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2669.8 1764 75.3
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2669.0 1768 75.6
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2668.6 1764 75.2
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2666.7 1766 75.1
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2664.8 1767 75.3
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2658.6 1767 75.0
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2653.2 1764 74.3
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2646.7 1770 74.9
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2645.5 1765 75.3
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2636.3 1764 74.3
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2634.4 1765 74.2
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2621.7 1763 74.8
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2603.9 1768 73.5
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2602.4 1764 73.6
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2585.4 1764 73.1
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2574.3 1759 73.4
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2572.3 1751 73.4
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2569.3 1760 72.6
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2568.9 1793 72.4
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2565.4 1768 72.6
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2558.9 1782 71.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2558.1 1840 71.4
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2556.6 1625 78.6
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2548.1 1761 72.6
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2546.2 1764 72.3
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2518.0 1773 72.0
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2515.0 1802 70.4
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2508.8 1830 70.7
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2496.1 1565 81.1
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2489.1 1773 70.7
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2454.9 1768 70.1
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2436.8 1764 70.1
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2416.7 1653 73.2
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2412.1 1780 68.0
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2354.7 1776 66.4
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2344.7 1781 66.5
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2318.9 1628 72.2
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2318.1 1686 71.9
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2315.8 1517 75.2
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2178.3 1389 76.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2149.8 1765 61.9
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1978.0 1252 78.9
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1879.4 1518 63.4
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1832.4 1093 81.7
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1709.1 1764 53.1
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1399.0 891 76.3
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1392.9 1804 42.8
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1374.0 1820 43.4
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1367.8 1872 41.4
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1318.9 1826 40.4
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1250.0 864 73.7
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1218.0 1796 39.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 0.0e+00 1158.7 1412 51.3
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1147.9 1816 37.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1116.3 1787 37.0
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.6e-309 1067.0 689 76.5
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 2.2e-303 1046.6 1802 35.9
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.2e-298 1030.8 667 76.0
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 3.2e-278 963.0 1900 33.7
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 5.7e-243 845.9 639 64.6
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 7.7e-224 782.3 505 78.6
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.6e-187 659.4 622 61.7
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 1.9e-153 548.5 639 52.4
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.2e-145 520.0 458 55.7
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.8e-135 488.8 339 74.3
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 1.4e-124 452.6 322 71.1
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 2.6e-123 448.4 1881 25.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.0e-115 422.2 469 48.2
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 2.7e-107 395.2 270 73.3
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.0e-106 393.3 251 82.1
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 4.0e-87 328.2 1925 23.4
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.0e-83 315.8 362 52.8
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.1e-81 310.1 249 65.1
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-80 306.6 345 52.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 8.1e-80 303.9 166 81.9
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.0e-58 233.8 151 71.5
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 8.7e-50 204.1 113 84.1
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 3.7e-40 172.2 100 87.0
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.8e-38 164.9 138 63.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.6e-35 155.2 210 47.6
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.1e-31 142.1 1979 20.1
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.9e-26 125.6 548 24.3
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.3e-25 122.1 75 80.0
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 4.8e-24 118.6 93 68.8
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 1.8e-23 116.7 74 70.3
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 1.5e-22 113.6 121 55.4
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 5.9e-22 111.7 65 87.7
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 7.7e-22 111.3 163 46.6
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 3.8e-21 109.0 115 55.7
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 1.4e-20 107.1 74 66.2
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.6e-19 103.6 96 56.2
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 3.3e-17 95.9 74 67.6
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 2.9e-13 82.8 170 38.8
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.2e-12 79.3 73 43.8
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 4.7e-11 75.5 63 55.6
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 6.1e-11 75.1 71 59.2
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.9e-11 74.7 138 39.9
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 8.2e-08 64.7 58 60.3


User provided reference genes

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