Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 3.4e-101 371.7 195 100.0
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 2.7e-77 292.4 196 80.6
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 1.5e-56 223.4 195 65.1
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 4.4e-56 221.9 199 65.8
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 1.6e-50 203.4 186 61.8
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 3.6e-50 202.2 121 87.6
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 8.1e-50 201.1 197 56.9
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.8e-49 199.9 197 56.3
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 5.8e-48 194.9 200 58.0
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 5.8e-48 194.9 200 58.0
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 4.1e-46 188.7 184 58.2
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 5.4e-46 188.3 211 54.0
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 7.1e-46 188.0 199 56.3
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 1.0e-44 184.1 203 56.2
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 1.0e-44 184.1 206 53.4
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 1.0e-44 184.1 196 55.6
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 3.9e-44 182.2 189 54.5
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 1.1e-43 180.6 199 55.8
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 5.6e-43 178.3 209 50.7
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 9.5e-43 177.6 197 53.3
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.6e-42 176.8 124 70.2
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 6.2e-42 174.9 196 53.6
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 1.8e-41 173.3 198 52.0
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 2.4e-41 172.9 132 64.4
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 3.1e-41 172.6 184 56.5
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 1.2e-40 170.6 127 68.5
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.2e-40 170.6 110 75.5
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.2e-40 170.6 110 76.4
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 1.5e-40 170.2 199 51.8
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 2.0e-40 169.9 200 54.5
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 2.6e-40 169.5 109 78.0
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 3.4e-40 169.1 195 51.8
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 3.4e-40 169.1 114 74.6
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 3.4e-40 169.1 127 66.9
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 4.4e-40 168.7 146 65.8
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 5.8e-40 168.3 201 50.7
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 9.9e-40 167.5 118 72.0
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 9.9e-40 167.5 196 51.5
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.3e-39 167.2 109 77.1
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 1.7e-39 166.8 191 53.4
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 2.2e-39 166.4 211 48.3
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 2.2e-39 166.4 106 80.2
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 3.8e-39 165.6 205 51.2
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 6.4e-39 164.9 178 54.5
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 8.4e-39 164.5 109 74.3
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 8.4e-39 164.5 108 74.1
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.9e-38 163.3 116 74.1
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.9e-38 163.3 116 74.1
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 3.2e-38 162.5 109 74.3
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 4.1e-38 162.2 202 47.0
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 5.4e-38 161.8 114 75.4
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 5.4e-38 161.8 141 60.3
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 5.4e-38 161.8 141 59.6
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 1.6e-37 160.2 205 48.8
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 1.6e-37 160.2 174 55.2
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 3.5e-37 159.1 109 72.5
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 3.5e-37 159.1 198 48.5
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 1.0e-36 157.5 176 55.7
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 1.0e-36 157.5 108 68.5
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 1.7e-36 156.8 107 73.8
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 1.7e-36 156.8 107 75.7
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 8.6e-36 154.5 105 77.1
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 1.5e-35 153.7 133 60.2
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 1.5e-35 153.7 100 76.0
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 1.9e-35 153.3 97 79.4
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 7.3e-35 151.4 108 70.4
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 7.3e-35 151.4 108 69.4
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 7.3e-35 151.4 183 54.6
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 9.6e-35 151.0 119 63.0
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 9.6e-35 151.0 117 65.0
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 2.1e-34 149.8 197 50.3
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 2.1e-34 149.8 128 60.9
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 2.1e-34 149.8 128 60.9
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 2.1e-34 149.8 108 68.5
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 2.1e-34 149.8 117 65.0
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 2.8e-34 149.4 110 65.5
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 4.7e-34 148.7 108 66.7
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 6.2e-34 148.3 128 60.2
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 6.2e-34 148.3 111 69.4
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 8.1e-34 147.9 207 47.8
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 1.8e-33 146.7 105 69.5
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 2.4e-33 146.4 94 74.5
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 5.2e-33 145.2 105 70.5
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 9.0e-33 144.4 108 66.7
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 3.4e-32 142.5 112 61.6
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 1.7e-31 140.2 152 53.3
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 6.4e-31 138.3 95 68.4
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 6.4e-31 138.3 129 53.5
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 5.4e-30 135.2 93 68.8
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 8.7e-28 127.9 95 69.5
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 3.6e-26 122.5 104 56.7
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 3.6e-26 122.5 104 57.7
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 1.1e-25 120.9 106 53.8
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 2.6e-24 116.3 72 79.2
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 4.5e-24 115.5 87 64.4
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 1.3e-23 114.0 83 68.7
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 6.4e-23 111.7 178 45.5
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 1.1e-22 110.9 85 61.2
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 9.3e-22 107.8 85 52.9
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 4.6e-21 105.5 107 49.5
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 6.0e-21 105.1 88 59.1
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 7.9e-21 104.8 108 50.9
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 1.6e-18 97.1 61 72.1
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-17 92.4 171 32.7
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 3.7e-10 69.3 43 72.1
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.1e-09 67.8 78 53.8
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 1.0e-07 61.2 93 40.9


User provided reference genes

Program Settings