Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.6e-188 662.1 393 100.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-153 546.2 397 78.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.4e-149 533.5 398 76.6
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 6.4e-147 524.6 402 78.1
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.7e-119 431.8 377 67.9
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-117 426.8 377 67.4
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-117 426.8 377 66.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 6.7e-112 408.3 407 60.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.3e-111 405.6 406 64.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.4e-111 404.8 399 59.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-110 403.7 345 67.0
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.1e-109 399.1 398 59.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.2e-108 397.5 345 66.7
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.9e-107 392.9 345 66.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-106 390.6 402 58.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 7.9e-105 384.8 400 59.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.8e-104 383.6 400 57.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.4e-103 378.3 400 58.8
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 7.4e-103 378.3 399 58.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.7e-102 377.1 403 60.8
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.2e-102 376.7 393 59.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.8e-102 376.3 400 62.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.8e-102 376.3 408 63.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.1e-101 372.9 398 63.6
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 7.7e-100 368.2 395 57.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 7.7e-100 368.2 394 58.1
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 8.5e-99 364.8 409 55.7
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.2e-98 362.5 406 55.4
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.4e-98 361.3 394 57.6
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.2e-97 360.9 405 56.0
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.7e-97 359.8 397 61.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-96 357.8 392 54.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.4e-96 357.5 400 56.5
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-96 357.5 398 58.3
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.6e-95 353.2 420 53.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 9.7e-95 351.3 413 52.8
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-94 350.9 396 55.8
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.8e-94 349.0 349 57.6
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.6e-92 343.2 398 53.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.9e-91 339.7 398 55.3
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 5.0e-91 339.0 412 52.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-90 337.0 393 53.9
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.5e-90 335.5 385 54.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.6e-89 332.8 390 52.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.7e-89 332.4 338 58.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.2e-88 328.9 404 51.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.2e-88 328.9 405 51.1
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.2e-87 327.8 387 54.5
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.0e-87 327.0 406 54.4
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.3e-87 326.2 387 57.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.3e-87 326.2 391 53.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.7e-86 322.8 396 52.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.8e-85 320.5 407 51.8
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.4e-85 320.1 407 52.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 4.2e-82 309.3 400 55.5
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.2e-81 307.8 389 52.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.6e-81 307.4 346 58.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.6e-81 306.2 410 50.2
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.3e-80 303.5 394 54.1
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.0e-79 300.4 397 54.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.6e-79 300.1 393 51.4
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.7e-79 298.9 330 55.8
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.7e-78 297.4 399 51.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.7e-78 297.4 399 52.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.2e-78 297.0 399 51.4
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.2e-78 297.0 394 55.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.2e-76 291.2 419 48.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.7e-76 290.0 397 51.9
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.0e-75 288.1 392 55.1
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.3e-75 287.0 335 54.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.9e-75 286.6 419 47.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 3.2e-74 283.1 388 53.1
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 9.5e-74 281.6 358 52.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.2e-73 281.2 333 57.7
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.6e-73 279.6 400 52.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.0e-73 278.5 387 48.6
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.0e-72 278.1 397 51.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.4e-72 277.7 298 65.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.8e-72 277.3 406 52.7
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.5e-71 274.2 396 54.8
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 7.5e-71 271.9 398 46.7
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.7e-70 269.6 388 48.2
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 6.3e-70 268.9 430 46.3
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.4e-69 267.7 394 45.9
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.4e-69 266.9 391 47.6
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.1e-69 266.5 367 50.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.2e-68 264.6 414 50.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-68 263.5 312 56.7
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.5e-68 263.1 410 45.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.7e-67 260.8 399 48.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 6.6e-67 258.8 400 49.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.4e-64 251.1 392 48.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.3e-64 250.4 390 44.1
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.0e-64 250.0 361 46.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.8e-61 240.7 402 45.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.2e-60 238.0 403 46.7
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.3e-59 234.6 333 50.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.7e-59 234.2 260 56.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.0e-59 232.6 388 44.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.9e-58 230.7 390 46.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.2e-57 228.0 369 47.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.6e-57 226.5 394 47.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 4.7e-57 226.1 392 44.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 6.2e-57 225.7 390 45.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 6.2e-57 225.7 390 45.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.0e-57 225.3 390 45.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 8.0e-57 225.3 390 45.1
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.4e-56 224.6 320 50.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.3e-56 223.8 390 45.1
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.1e-56 223.4 322 46.3
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.0e-55 220.7 390 44.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.8e-55 219.2 403 45.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.9e-54 216.1 358 47.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.1e-53 214.9 186 64.0
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.1e-49 198.7 269 49.8
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.1e-49 198.7 269 49.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.5e-47 194.5 389 39.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.7e-46 191.0 286 49.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.0e-44 182.6 296 43.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.1e-43 179.5 412 37.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.3e-42 176.4 336 37.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.4e-37 159.5 337 38.9
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 7.8e-36 155.6 193 53.4
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 6.2e-33 146.0 214 44.9
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.1e-32 145.2 236 45.8
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-32 144.4 125 60.0
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.0e-31 141.0 100 81.0
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-31 139.4 191 49.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-31 139.4 191 49.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.7e-30 137.9 296 37.8
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.1e-29 135.2 395 33.9
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-29 134.8 118 67.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-29 133.3 193 47.2
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 3.5e-28 130.2 397 33.0
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.8e-23 112.8 188 44.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.3e-22 111.7 310 34.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.7e-22 111.3 80 72.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-20 103.2 189 40.2
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-20 102.8 188 40.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.9e-20 102.4 188 40.4
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-19 100.9 188 39.9
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.7e-19 99.4 188 39.4
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.7e-19 99.0 188 39.9
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.4e-16 91.7 210 38.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-14 84.0 307 32.9
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-13 79.3 188 34.6
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 7.9e-12 75.9 88 55.7
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.5e-10 70.9 57 70.2
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 1.1e-08 65.5 87 47.1
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 7.6e-07 59.3 60 58.3
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 1.7e-06 58.2 142 41.5
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 6.5e-06 56.2 80 48.8


User provided reference genes

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