Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.5e-71 272.7 135 100.0
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 1.1e-40 170.2 140 72.1
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-29 132.5 154 59.7
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.4e-29 131.3 154 59.7
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-28 130.2 154 59.7
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.3e-22 110.2 138 56.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.9e-20 100.9 154 49.4
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.0e-19 100.5 143 53.1
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.1e-19 98.2 143 51.0
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 8.7e-19 97.4 153 51.6
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.6e-18 94.7 136 48.5
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 7.4e-18 94.4 145 50.3
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 2.8e-17 92.4 146 50.0
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.8e-17 91.7 146 52.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 8.1e-17 90.9 148 49.3
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 8.1e-17 90.9 146 50.0
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 8.1e-17 90.9 138 51.4
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 3.1e-16 89.0 138 49.3
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 4.0e-16 88.6 144 47.2
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.3e-16 88.2 138 50.0
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 9.0e-16 87.4 138 47.1
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 9.0e-16 87.4 138 49.3
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.2e-15 87.0 135 48.9
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 2.0e-15 86.3 171 42.7
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.0e-15 86.3 145 50.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.6e-15 85.9 137 46.0
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.6e-15 85.9 135 50.4
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.6e-15 85.9 135 48.1
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 4.5e-15 85.1 161 44.7
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.6e-15 84.3 151 46.4
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-14 83.6 134 46.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.3e-14 83.6 134 46.3
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.2e-14 82.8 147 46.3
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-14 82.4 136 47.1
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.8e-14 82.0 136 45.6
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 4.9e-14 81.6 158 42.4
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 6.4e-14 81.3 137 40.9
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-13 80.1 143 46.2
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.4e-13 80.1 138 42.8
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.4e-13 79.3 145 48.3
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.4e-13 79.3 164 43.9
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.2e-13 78.6 136 46.3
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.2e-13 78.6 144 45.1
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.2e-12 77.0 161 39.1
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.7e-12 75.9 149 44.3
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 2.7e-12 75.9 148 44.6
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 3.5e-12 75.5 143 46.2
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.6e-12 75.1 139 43.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 4.6e-12 75.1 150 45.3
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 4.6e-12 75.1 146 45.2
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.0e-11 73.9 129 46.5
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.0e-11 73.9 135 45.2
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 3.0e-11 72.4 145 44.1
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 3.9e-11 72.0 164 39.0
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 5.1e-11 71.6 160 41.9
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 5.1e-11 71.6 138 42.0
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.7e-11 70.9 140 45.0
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 8.7e-11 70.9 140 45.0
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 8.7e-11 70.9 128 45.3
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 1.1e-10 70.5 164 39.0
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.5e-10 69.3 138 43.5
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 3.3e-10 68.9 137 43.1
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.3e-10 68.6 140 42.9
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 5.6e-10 68.2 140 42.9
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 7.4e-10 67.8 162 39.5
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 9.6e-10 67.4 141 44.0
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 9.6e-10 67.4 144 43.8
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-09 67.0 139 42.4
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-09 67.0 141 44.7
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-09 67.0 139 42.4
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.6e-09 66.6 141 40.4
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.6e-09 66.6 153 35.9
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 1.6e-09 66.6 165 38.2
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.1e-09 66.2 144 38.2
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 2.1e-09 66.2 150 38.7
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 2.8e-09 65.9 75 50.7
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 2.8e-09 65.9 137 39.4
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 3.7e-09 65.5 144 40.3
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.4e-08 63.5 138 39.1
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 3.1e-08 62.4 141 42.6
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.1e-08 62.4 143 42.7
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 4.0e-08 62.0 159 38.4
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 6.9e-08 61.2 124 38.7
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 6.9e-08 61.2 138 36.2
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 6.9e-08 61.2 138 42.0
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 9.0e-08 60.8 129 38.0
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.0e-08 60.8 135 41.5
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.0e-08 60.8 135 41.5
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 9.0e-08 60.8 135 41.5
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 1.2e-07 60.5 128 43.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.2e-07 60.5 147 36.7
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 1.2e-07 60.5 141 40.4
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.5e-07 60.1 141 40.4
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-07 60.1 100 44.0
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 2.0e-07 59.7 138 37.0
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.0e-07 59.7 138 37.0
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.6e-07 59.3 138 37.0
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.6e-07 59.3 138 37.0
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 3.4e-07 58.9 133 42.9
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 3.4e-07 58.9 133 42.9
BcaC07g37989 Brassica carinata HOM05D010379 ORTHO05D012419 3.4e-07 58.9 128 44.5
BolC8t48370H Brassica oleracea HOM05D010379 ORTHO05D012419 3.4e-07 58.9 128 44.5
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 3.4e-07 58.9 138 36.2
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 3.4e-07 58.9 153 40.5
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 5.8e-07 58.2 124 37.9
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 5.8e-07 58.2 138 37.0
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.6e-07 57.8 125 42.4
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 7.6e-07 57.8 133 42.9
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 7.6e-07 57.8 137 40.9
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 1.3e-06 57.0 150 38.0
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.3e-06 57.0 148 36.5
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.7e-06 56.6 141 39.7
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 2.2e-06 56.2 127 42.5
C01p26370 Brassica napus HOM05D010379 ORTHO05D012419 2.2e-06 56.2 127 42.5
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 2.2e-06 56.2 127 42.5
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.2e-06 56.2 123 42.3
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 2.2e-06 56.2 86 51.2
A08p12490 Brassica napus HOM05D010379 ORTHO05D012419 2.9e-06 55.8 128 42.2
BraA08t33240Z Brassica rapa HOM05D010379 ORTHO05D012419 2.9e-06 55.8 128 42.2
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-06 55.8 140 38.6
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 2.9e-06 55.8 137 38.7
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 4.9e-06 55.1 134 41.8
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 6.5e-06 54.7 143 36.4
BcaNung00193 Brassica carinata HOM05D010379 ORTHO05D012419 8.4e-06 54.3 128 43.8
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 8.4e-06 54.3 135 41.5
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 8.4e-06 54.3 135 41.5
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 8.4e-06 54.3 135 41.5
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 8.4e-06 54.3 135 41.5


User provided reference genes

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