Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.9e-301 1036.2 531 100.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.1e-265 918.7 532 88.7
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.9e-260 899.8 523 85.5
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.9e-260 899.8 523 85.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.5e-255 885.9 518 85.3
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-247 859.8 527 82.7
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-244 848.6 532 81.6
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-240 836.3 524 80.5
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.8e-240 835.9 532 79.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.0e-240 835.1 532 79.7
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.1e-240 834.3 537 81.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.1e-237 824.7 520 79.0
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 6.9e-237 823.9 527 80.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.2e-236 823.2 527 77.8
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.2e-236 823.2 531 78.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.6e-236 822.0 524 77.1
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.6e-236 822.0 518 79.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.4e-234 816.2 518 78.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.9e-234 815.8 523 79.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.1e-233 812.4 530 78.3
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.5e-233 811.6 532 76.7
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.5e-233 811.6 524 76.9
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.9e-233 810.4 528 76.5
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.0e-232 808.5 519 76.7
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.0e-232 808.5 526 77.4
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.0e-232 808.5 533 77.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.5e-231 806.2 518 77.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.2e-230 802.4 524 76.3
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.7e-230 801.6 525 77.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 8.2e-230 800.4 522 76.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.0e-228 795.8 531 76.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.9e-228 794.3 523 76.9
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.1e-223 780.0 531 74.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.7e-222 776.2 516 76.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.8e-222 775.4 527 76.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 8.2e-222 773.9 534 73.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 8.2e-222 773.9 530 75.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-221 772.7 522 75.1
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-221 772.7 533 73.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.4e-221 772.3 518 75.7
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.1e-221 771.5 533 73.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 7.7e-220 767.3 533 72.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.9e-219 765.4 532 73.1
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.8e-219 765.0 534 71.7
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 6.5e-219 764.2 530 71.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 8.5e-219 763.8 534 71.5
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 8.5e-219 763.8 524 74.8
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.5e-219 763.8 460 83.0
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-218 762.3 537 71.5
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.2e-218 760.8 514 74.7
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.2e-217 760.0 532 70.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.3e-216 755.7 538 72.7
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.0e-216 755.4 520 72.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 5.1e-216 754.6 528 72.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.1e-215 753.4 521 73.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.1e-215 753.4 538 72.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.1e-215 753.4 531 70.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.5e-215 753.1 541 71.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.6e-215 752.3 511 75.1
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 4.4e-215 751.5 528 73.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 5.7e-215 751.1 460 82.0
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 9.7e-215 750.4 536 72.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 9.7e-215 750.4 536 72.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 9.7e-215 750.4 536 72.6
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 9.7e-215 750.4 529 73.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.7e-214 749.6 522 73.0
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.7e-214 748.4 536 72.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.7e-214 748.4 525 71.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.8e-214 748.0 519 74.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 6.3e-214 747.7 480 79.0
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.1e-213 746.9 518 73.6
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.1e-213 746.9 534 72.7
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.4e-213 746.5 540 71.3
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.1e-213 745.3 540 71.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 5.3e-213 744.6 520 71.2
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.3e-213 744.6 520 71.2
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 5.3e-213 744.6 540 70.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 9.1e-213 743.8 540 70.9
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.1e-213 743.8 523 72.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.2e-212 743.4 528 72.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.6e-212 743.0 530 68.9
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-212 742.3 517 72.0
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.6e-212 742.3 528 72.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.6e-212 742.3 514 71.8
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.6e-212 742.3 538 71.4
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 5.9e-212 741.1 517 72.0
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 5.9e-212 741.1 530 70.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-211 740.3 529 72.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-211 740.0 529 72.0
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-211 740.0 529 72.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.8e-211 738.4 528 72.0
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.0e-211 738.0 517 68.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-210 736.5 536 71.5
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.9e-210 736.1 522 69.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 9.4e-210 733.8 532 71.2
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.6e-209 731.9 510 72.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 6.1e-209 731.1 521 67.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.1e-207 726.9 523 72.1
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.3e-207 725.3 564 67.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.3e-207 725.3 479 76.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 9.7e-207 723.8 479 76.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 7.0e-205 717.6 520 70.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.5e-204 714.9 507 72.2
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.9e-204 714.5 433 82.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.0e-200 703.7 460 73.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.4e-199 698.7 529 68.6
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.5e-191 671.0 449 76.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.1e-189 665.2 517 64.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 5.0e-187 658.3 457 71.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.7e-185 651.7 529 63.5
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 3.9e-179 632.1 427 74.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.4e-176 623.6 525 61.1
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 5.8e-175 618.2 521 59.9
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.7e-174 616.7 530 60.2
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 7.8e-172 607.8 460 65.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.6e-171 604.7 533 58.5
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.6e-171 604.7 388 77.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.1e-168 597.4 385 78.2
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 4.4e-167 592.0 391 73.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.3e-166 590.5 382 77.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.7e-166 589.0 519 59.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.6e-163 578.2 385 73.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.9e-146 523.5 358 72.9
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.7e-139 500.4 318 78.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.7e-131 471.9 351 70.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-127 461.1 472 49.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.1e-124 450.3 322 68.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.3e-121 438.7 456 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 8.2e-121 438.3 528 46.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.6e-108 396.4 505 42.4
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.8e-105 386.0 225 86.2
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 4.5e-103 379.4 546 39.2
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.2e-84 318.2 241 70.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 5.0e-70 269.6 180 76.7
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-68 265.0 192 69.3
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.1e-68 262.7 199 69.8
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 3.0e-62 243.8 152 80.3
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.1e-59 233.8 171 64.9
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.4e-50 203.8 140 72.1
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-49 201.8 156 66.0
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.3e-45 186.8 159 59.1
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.1e-44 184.5 138 69.6
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-40 171.4 138 65.2
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.4e-35 155.2 97 79.4
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.6e-31 141.7 150 52.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.4e-26 124.0 110 60.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.5e-26 123.6 87 75.9
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-23 115.2 505 24.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 6.7e-22 109.8 470 25.5
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.4e-19 101.3 71 64.8
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.1e-12 78.2 67 56.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.1e-12 78.2 67 56.7
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.1e-08 65.9 46 63.0
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 5.5e-08 63.5 45 62.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 7.1e-08 63.2 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 6.0e-07 60.1 46 58.7


User provided reference genes

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