Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 5.5e-136 487.6 247 100.0
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 2.5e-133 478.8 247 98.0
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.3e-132 476.5 247 98.0
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.3e-131 471.1 245 96.7
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.3e-131 471.1 245 96.7
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.0e-131 470.3 245 96.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.5e-130 469.5 245 95.5
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.5e-130 469.5 245 95.9
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.5e-130 469.5 245 95.9
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.7e-129 466.1 247 95.1
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.9e-129 465.3 247 93.5
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 3.8e-129 464.9 245 95.1
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.1e-128 463.4 245 93.9
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.1e-128 463.4 247 93.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.1e-128 463.4 245 94.3
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.1e-128 463.4 245 94.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.4e-128 463.0 247 92.7
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.9e-128 462.6 246 92.7
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.2e-128 461.5 245 93.9
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 4.2e-128 461.5 247 91.9
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 4.2e-128 461.5 245 94.7
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 5.5e-128 461.1 245 94.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 7.1e-128 460.7 245 94.7
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 7.1e-128 460.7 247 92.7
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 9.3e-128 460.3 247 93.9
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.2e-127 459.9 247 92.3
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.6e-127 459.5 245 93.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 4.6e-127 458.0 244 93.4
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 6.1e-127 457.6 246 93.5
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 6.1e-127 457.6 245 93.5
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.1e-127 457.6 245 93.5
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.1e-127 457.6 245 93.5
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.0e-126 456.8 252 90.9
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.0e-126 456.8 247 92.7
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.0e-126 456.8 247 92.3
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.3e-126 456.4 245 92.2
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.3e-126 456.4 247 91.9
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.0e-126 455.3 247 92.7
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 3.0e-126 455.3 247 92.3
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 3.9e-126 454.9 247 91.5
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 6.7e-126 454.1 247 91.5
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.1e-125 453.4 245 91.0
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.5e-125 453.0 245 92.7
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.9e-125 452.6 245 91.8
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.5e-125 452.2 248 91.1
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.5e-125 452.2 245 92.2
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 4.3e-125 451.4 248 93.1
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 4.3e-125 451.4 248 93.1
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.1
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 90.7
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 90.7
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 5.7e-125 451.1 246 91.1
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 90.7
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 7.4e-125 450.7 243 91.8
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 90.6
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 90.2
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 9.7e-125 450.3 246 91.5
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.3
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.3
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 90.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.3e-124 449.9 243 90.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.3
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.6e-124 449.5 243 91.8
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 2.8e-124 448.7 248 89.9
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 2.8e-124 448.7 248 89.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 89.5
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.8
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.4
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 90.6
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.3
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 91.5
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 6.3e-124 447.6 248 89.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 89.5
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 89.5
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.1e-123 446.8 245 90.2
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.1e-123 446.8 246 92.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 1.4e-123 446.4 247 90.7
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.4e-123 446.4 245 90.2
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.8e-123 446.0 245 90.2
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 89.1
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 89.1
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 2.4e-123 445.7 245 89.8
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 3.1e-123 445.3 245 89.8
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 89.1
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 5.3e-123 444.5 244 91.0
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 6.9e-123 444.1 245 90.2
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.5
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.5
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.5
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.5
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 88.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.1
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.1
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.5
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.5e-122 443.0 244 90.2
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 246 89.4
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.1
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 243 89.7
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 88.7
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 88.3
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 7.7e-122 440.7 245 89.0
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.3
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.3e-121 439.9 248 90.3
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 88.7
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 3.8e-121 438.3 246 88.6
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 5.0e-121 438.0 245 88.6
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.1e-120 436.8 304 76.0
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 87.9
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 87.9
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 88.6
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.4e-120 436.4 269 83.6
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 87.4
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 87.4
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 88.3
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 87.4
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.2e-120 435.3 234 93.2
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 4.6e-119 431.4 246 87.4
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 3.9e-118 428.3 284 79.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.1e-118 427.9 290 78.6
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 2.0e-117 426.0 260 84.2
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 4.3e-117 424.9 246 86.2
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 7.4e-117 424.1 246 87.0
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.2e-116 422.5 246 86.6
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.8e-116 422.2 246 85.8
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.5e-114 416.4 247 85.8
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.0e-113 413.7 250 83.2
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 4.2e-112 408.3 251 81.3
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 1.2e-111 406.8 332 66.9
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 1.8e-110 402.9 250 80.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 2.0e-109 399.4 264 79.2
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 7.4e-109 397.5 378 59.3
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 9.7e-109 397.1 245 80.4
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.7e-108 395.2 209 93.3
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.7e-108 395.2 209 93.3
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 6.3e-108 394.4 252 77.8
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.4e-107 392.5 251 77.3
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.2e-105 386.0 252 75.4
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 2.1e-103 379.4 213 90.1
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.1e-101 373.6 359 59.9
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 7.2e-96 354.4 245 75.1
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.4e-93 345.5 245 75.9
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 7.0e-91 337.8 198 89.4
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.2e-88 327.8 245 71.4
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 6.3e-84 314.7 179 88.8
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.2e-82 310.5 163 93.3
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 6.6e-81 304.7 172 90.1
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.5e-80 303.5 172 90.1
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-79 298.5 166 88.0
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 8.6e-73 277.7 280 56.4
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 3.7e-60 235.7 241 48.5
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 6.0e-58 228.4 138 82.6
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 6.0e-50 201.8 245 52.7
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.3e-49 200.7 232 44.8
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 2.4e-46 189.9 249 43.0
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 6.8e-46 188.3 102 89.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 8.7e-41 171.4 94 88.3
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 7.3e-40 168.3 199 54.3
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 7.6e-37 158.3 163 56.4
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.7e-33 147.1 141 58.9
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 9.0e-30 134.8 82 81.7
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.8e-28 129.4 82 81.7
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 4.2e-27 125.9 83 74.7
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.5e-27 125.6 83 75.9
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 2.3e-25 120.2 212 41.5
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.5e-24 117.5 232 35.3
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 3.2e-19 99.8 99 48.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.7e-18 96.7 53 94.3
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 9.6e-16 88.2 52 92.3
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.8e-15 85.9 51 80.4
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 6.3e-15 85.5 46 84.8
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 8.2e-15 85.1 51 86.3
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.1e-14 84.7 79 62.0
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 2.4e-14 83.6 74 63.5
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 4.2e-11 72.8 94 52.1
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 7.2e-11 72.0 90 53.3
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.9e-10 68.6 44 84.1
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 3.3e-08 63.2 36 75.0
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 3.3e-08 63.2 36 75.0
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 9.7e-08 61.6 36 72.2
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 9.7e-08 61.6 90 48.9
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 1.4e-06 57.8 87 48.3


User provided reference genes

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