Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G233600 Theobroma cacao HOM05D007192 ORTHO05D009034 9.7e-102 373.6 209 100.0
Gohir.A06G205200 Gossypium hirsutum HOM05D007192 ORTHO05D009034 7.0e-76 287.7 211 79.6
Gohir.D06G216300 Gossypium hirsutum HOM05D007192 ORTHO05D009034 1.7e-74 283.1 211 78.7
Gorai.010G249900 Gossypium raimondii HOM05D007192 ORTHO05D009034 1.7e-74 283.1 211 78.7
Duzib235G0907 Durio zibethinus HOM05D007192 ORTHO05D009034 1.2e-72 276.9 217 75.6
Atru.chr1.2446 Acer truncatum HOM05D007192 ORTHO05D009034 2.5e-65 252.7 209 71.3
TWI38G0802 Tripterygium wilfordii HOM05D007192 ORTHO05D009034 2.9e-61 239.2 210 68.6
Ciclev10016735m.g Citrus clementina HOM05D007192 ORTHO05D009034 2.4e-60 236.1 207 69.6
QL05p069683 Quercus lobata HOM05D007192 ORTHO05D009034 1.6e-59 233.4 212 68.9
Haze_08662 Corylus avellana HOM05D007192 ORTHO05D009034 1.0e-58 230.7 213 69.0
Potri.016G013500 Populus trichocarpa HOM05D007192 ORTHO05D009034 1.3e-58 230.3 209 66.0
Dinv07405 Davidia involucrata HOM05D007192 ORTHO05D009034 5.1e-58 228.4 216 61.6
Sabra06G0008700 Salix brachista HOM05D007192 ORTHO05D009034 1.9e-57 226.5 209 65.6
MD10G1331900 Malus domestica HOM05D007192 ORTHO05D009034 3.3e-57 225.7 215 67.0
Hma1.2p1_0657F.1_g197140 Hydrangea macrophylla HOM05D007192 ORTHO05D009034 2.8e-56 222.6 213 60.1
ClCG01G021480 Citrullus lanatus HOM05D007192 ORTHO05D009034 3.6e-56 222.2 215 63.3
MD05G1358000 Malus domestica HOM05D007192 ORTHO05D009034 3.6e-56 222.2 208 67.3
Prupe.4G010200 Prunus persica HOM05D007192 ORTHO05D009034 3.6e-56 222.2 207 65.2
GSVIVG01003334001 Vitis vinifera HOM05D007192 ORTHO05D009034 5.2e-55 218.4 209 63.2
MELO3C007436.2 Cucumis melo HOM05D007192 ORTHO05D009034 6.8e-55 218.0 213 61.5
CsaV3_6G048500 Cucumis sativus L. HOM05D007192 ORTHO05D009034 8.9e-55 217.6 214 65.9
Nn1g07392 Nelumbo nucifera HOM05D007192 ORTHO05D009034 8.9e-55 217.6 212 65.1
CiPaw.09G102500 Carya illinoinensis HOM05D007192 ORTHO05D009034 2.0e-54 216.5 212 60.4
RcHm_v2.0_Chr5g0001481 Rosa chinensis HOM05D007192 ORTHO05D009034 7.5e-54 214.5 210 60.5
CANSAT56G2005 Cannabis sativa HOM05D007192 ORTHO05D009034 9.9e-54 214.2 211 64.0
Dinv13967 Davidia involucrata HOM05D001152 ORTHO05D000967 1.3e-53 213.8 207 60.4
PGR042G3283 Punica granatum HOM05D007192 ORTHO05D009034 1.7e-53 213.4 209 61.2
Sed0016386 Sechium edule HOM05D007192 ORTHO05D009034 4.9e-53 211.8 209 62.2
FvH4_3g00960 Fragaria vesca HOM05D007192 ORTHO05D009034 7.1e-52 208.0 211 60.2
Glyma.07G265300 Glycine max HOM05D007192 ORTHO05D009034 2.7e-51 206.1 209 58.4
TAR629G2173 Trochodendron aralioides HOM05D007192 ORTHO05D009034 3.5e-51 205.7 214 61.2
Eucgr.E03926 Eucalyptus grandis HOM05D007192 ORTHO05D009034 1.3e-50 203.8 172 71.5
Phvul.003G083700 Phaseolus vulgaris HOM05D007192 ORTHO05D009034 2.5e-49 199.5 209 56.5
Hma1.2p1_0657F.1_g197150 Hydrangea macrophylla HOM05D007192 ORTHO05D009034 7.3e-49 198.0 269 48.0
Glyma.17G008700 Glycine max HOM05D007192 ORTHO05D009034 9.5e-49 197.6 175 62.3
THA.LOC104799643 Tarenaya hassleriana HOM05D007192 ORTHO05D009034 6.2e-48 194.9 214 57.9
Oeu016820.1 Olea europaea HOM05D007192 ORTHO05D009034 1.4e-47 193.7 225 53.3
Lj4g0002454 Lotus japonicus HOM05D007192 ORTHO05D009034 1.8e-47 193.4 180 61.7
PSO541G1889 Papaver somniferum HOM05D007192 ORTHO05D009034 2.6e-46 189.5 221 60.2
SalBow8G5140 Salvia bowleyana HOM05D007192 ORTHO05D009034 1.7e-45 186.8 206 53.4
MSTRG.14611 Avicennia marina HOM05D007192 ORTHO05D009034 2.2e-45 186.4 198 55.6
PSO675G6515 Papaver somniferum HOM05D007192 ORTHO05D009034 2.2e-45 186.4 221 59.3
PGSC0003DMG400013349 Solanum tuberosum HOM05D007192 ORTHO05D009034 6.4e-45 184.9 212 53.3
Cc09_g00850 Coffea canephora HOM05D007192 ORTHO05D009034 1.1e-44 184.1 217 58.5
Cfa000100 Carpinus fangiana HOM05D007192 ORTHO05D009034 1.9e-44 183.3 149 77.2
Duzib192G0317 Durio zibethinus HOM05D007192 ORTHO05D009034 5.4e-44 181.8 151 69.5
Nitab4.5_0000143g0180 Nicotiana tabacum HOM05D007192 ORTHO05D009034 5.4e-44 181.8 217 53.9
Solyc11g012280.2 Solanum lycopersicum HOM05D007192 ORTHO05D009034 7.1e-44 181.4 212 52.8
Sopen11g007060 Solanum pennellii HOM05D007192 ORTHO05D009034 1.2e-43 180.6 212 52.4
arahy.Tifrunner.gnm1.ann1.E8J80R Arachis hypogaea HOM05D007192 ORTHO05D009034 4.6e-43 178.7 164 65.2
Ah.14g087620 Amaranthus hybridus HOM05D007192 ORTHO05D009034 6.0e-43 178.3 212 57.1
Sc24g0000280 Simmondsia chinensis HOM05D007192 ORTHO05D009034 7.8e-43 177.9 159 69.2
Nitab4.5_0011595g0010 Nicotiana tabacum HOM05D007192 ORTHO05D009034 1.7e-42 176.8 214 53.3
TPR.G37116 Trifolium pratense HOM05D007192 ORTHO05D009034 1.7e-42 176.8 211 53.1
Manes.09G076800 Manihot esculenta HOM05D007192 ORTHO05D009034 2.3e-42 176.4 182 63.2
Aqoxy2G00603 Aquilegia oxysepala HOM05D007192 ORTHO05D009034 7.3e-41 171.4 221 52.0
COL.COLO4_31887 Corchorus olitorius HOM05D007192 ORTHO05D009034 7.3e-41 171.4 211 49.3
Medtr4g133070 Medicago truncatula HOM05D007192 ORTHO05D009034 9.6e-41 171.0 188 57.4
Peaxi162Scf00352g00210 Petunia axillaris HOM05D007192 ORTHO05D009034 9.6e-41 171.0 214 50.5
Sp6g24270 Schrenkiella parvula HOM05D007192 ORTHO05D009034 1.8e-39 166.8 165 63.6
Hund23406 Selenicereus undatus HOM05D007192 ORTHO05D009034 3.1e-39 166.0 210 51.0
Actinidia26860 Actinidia chinensis HOM05D007192 ORTHO05D009034 5.3e-39 165.2 166 65.1
CDE08G0359 Ceratophyllum demersum HOM05D007192 ORTHO05D009034 2.6e-38 162.9 216 52.8
FAN21G0227 Fragaria x ananassa HOM05D007192 ORTHO05D009034 1.7e-37 160.2 149 61.7
CARHR192700 Cardamine hirsuta HOM05D007192 ORTHO05D009034 6.4e-37 158.3 170 61.2
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 1.1e-36 157.5 168 55.4
BcaB05g22869 Brassica carinata HOM05D007192 ORTHO05D009034 3.2e-36 156.0 167 57.5
VMungo1215G1962 Vigna mungo HOM05D007192 ORTHO05D009034 7.1e-36 154.8 147 61.9
unitig_37.g12189 Utricularia gibba HOM05D007192 ORTHO05D009034 9.3e-36 154.5 207 47.8
Thhalv10014703m.g Eutrema salsugineum HOM05D007192 ORTHO05D009034 1.6e-35 153.7 167 59.9
HanXRQChr10g0285171 Helianthus annuus HOM05D007192 ORTHO05D009034 1.6e-35 153.7 184 51.6
Rhsim02G0145900 Rhododendron simsii HOM05D007192 ORTHO05D009034 3.5e-35 152.5 209 48.3
BNapus_Darmor_BZH_scaffold_38p01780 Brassica napus HOM05D007192 ORTHO05D009034 2.3e-34 149.8 166 59.0
BraA02t05557Z Brassica rapa HOM05D007192 ORTHO05D009034 2.3e-34 149.8 166 59.0
Lalb_Chr07g0176981 Lupinus albus HOM05D007192 ORTHO05D009034 3.0e-34 149.4 217 46.5
AL6G31680 Arabidopsis lyrata HOM05D007192 ORTHO05D009034 6.6e-34 148.3 165 57.6
Lsat_1_v5_gn_0_23500 Lactuca sativa HOM05D007192 ORTHO05D009034 1.5e-33 147.1 217 48.4
DCAR_004888 Daucus carota HOM05D007192 ORTHO05D009034 3.3e-33 146.0 192 54.7
Aa31LG2G11450 Aethionema arabicum HOM05D007192 ORTHO05D009034 4.3e-33 145.6 150 60.7
AT5G20130 Arabidopsis thaliana HOM05D007192 ORTHO05D009034 4.3e-33 145.6 165 57.6
C03p11420 Brassica napus HOM05D007192 ORTHO05D009034 4.3e-33 145.6 171 59.1
BcaC03g13735 Brassica carinata HOM05D007192 ORTHO05D009034 5.6e-33 145.2 166 57.8
BolC2t07017H Brassica oleracea HOM05D007192 ORTHO05D009034 5.6e-33 145.2 166 57.8
Carub.0006s1851 Capsella rubella HOM05D007192 ORTHO05D009034 1.6e-32 143.7 170 61.2
A03p09840 Brassica napus HOM05D007192 ORTHO05D009034 1.1e-31 141.0 167 58.1
BraA03t10299Z Brassica rapa HOM05D007192 ORTHO05D009034 1.1e-31 141.0 167 58.1
CAN.G1186.41 Capsicum annuum HOM05D007192 ORTHO05D009034 4.0e-31 139.0 150 55.3
ATR0776G058 Amborella trichopoda HOM05D007192 ORTHO05D009034 5.3e-31 138.7 159 55.3
HPP92_000005 Vanilla planifolia HOM05D007192 ORTHO05D009034 5.3e-31 138.7 173 45.1
Potri.006G010600 Populus trichocarpa HOM05D007192 ORTHO05D009034 9.9e-30 134.4 126 66.7
Psat4g005120 Pisum sativum HOM05D007192 ORTHO05D009034 2.9e-29 132.9 176 51.1
ECA248G2945 Erigeron canadensis HOM05D007192 ORTHO05D009034 1.3e-26 124.0 165 52.1
FAN25G1082 Fragaria x ananassa HOM05D007192 ORTHO05D009034 2.3e-26 123.2 126 59.5
vmacro03641 Vaccinium macrocarpon HOM05D007192 ORTHO05D009034 8.7e-26 121.3 155 47.1
Migut.M01397 Erythranthe guttata HOM05D007192 ORTHO05D009034 4.3e-25 119.0 141 58.2
Lj2A261T34 Lonicera japonica HOM05D007192 ORTHO05D009034 2.1e-24 116.7 164 54.3
EL10Ac8g20192 Beta vulgaris HOM05D007192 ORTHO05D009034 2.0e-22 110.2 126 58.7
SGA_v2.0_scaffold4G01874 Striga asiatica HOM05D007192 ORTHO05D009034 1.7e-21 107.1 142 54.2
BcaB01g04801 Brassica carinata HOM05D007192 ORTHO05D009034 6.0e-19 98.6 168 40.5
BcaB01g04802 Brassica carinata HOM05D007192 ORTHO05D009034 1.0e-18 97.8 98 54.1
BolC3t13616H Brassica oleracea HOM05D007192 ORTHO05D009034 1.0e-18 97.8 98 54.1
SEGI_14587 Sequoiadendron giganteum HOM05D007192 ORTHO05D009034 2.4e-15 86.7 183 42.1
Pp3c14_17130 Physcomitrium patens HOM05D007192 ORTHO05D009034 1.5e-14 84.0 190 40.5
SEGI_15910 Sequoiadendron giganteum HOM05D007192 ORTHO05D009034 4.5e-14 82.4 154 46.1
AagrBONN_evm.TU.Sc2ySwM_362.1438 Anthoceros agrestis HOM05D007192 ORTHO05D009034 3.2e-12 76.3 194 36.1
AUR62021857 Chenopodium quinoa HOM05D007192 ORTHO05D009034 2.7e-11 73.2 210 31.0
Mapoly0007s0283 Marchantia polymorpha HOM05D007192 ORTHO05D009034 7.4e-09 65.1 163 42.3
Mapoly0252s0005 Marchantia polymorpha HOM05D007192 ORTHO05D009034 7.4e-09 65.1 163 42.3


User provided reference genes

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