Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 4.1e-209 731.1 359 100.0
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 2.9e-178 628.6 359 86.1
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 9.3e-177 623.6 351 86.6
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.7e-176 622.1 351 86.6
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.2e-169 598.6 351 84.9
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 6.7e-151 537.7 357 75.1
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 2.1e-144 516.2 365 73.4
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 2.1e-144 516.2 365 73.4
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.5e-142 509.2 363 71.3
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.3e-141 506.9 364 71.2
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.7e-141 505.4 364 70.9
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 6.3e-141 504.6 373 67.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.3e-141 504.6 349 72.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 5.3e-140 501.5 307 76.9
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 9.1e-140 500.7 368 70.7
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.5e-139 500.0 356 71.3
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.0e-139 499.6 364 70.3
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.0e-139 499.6 350 72.0
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 4.5e-139 498.4 362 72.7
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-138 496.9 361 70.9
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.7e-138 496.5 364 70.9
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 2.9e-138 495.7 328 74.1
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 3.8e-138 495.4 362 70.7
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 3.8e-138 495.4 353 69.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.4e-137 493.4 310 76.1
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.9e-137 493.0 357 70.3
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 4.2e-137 491.9 352 71.0
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 9.4e-137 490.7 366 70.5
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.1e-136 489.6 347 72.0
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.7e-136 489.2 355 70.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 3.6e-136 488.8 366 70.2
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 7.9e-136 487.6 345 71.9
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.0e-135 487.3 358 69.3
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 5.1e-135 485.0 322 73.0
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 6.7e-135 484.6 359 70.5
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 6.7e-135 484.6 373 67.3
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 8.8e-135 484.2 354 70.1
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 8.8e-135 484.2 329 72.6
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 8.8e-135 484.2 312 74.4
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.3e-134 482.3 359 70.5
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 3.3e-134 482.3 368 67.9
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 4.4e-134 481.9 356 70.2
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 4.4e-134 481.9 331 71.6
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.7e-133 479.9 307 75.9
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.7e-133 479.9 318 72.3
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 4.8e-133 478.4 352 69.9
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 6.3e-133 478.0 328 72.0
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 8.2e-133 477.6 373 66.8
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 1.1e-132 477.2 357 69.5
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.4e-132 476.1 356 68.5
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 2.4e-132 476.1 360 69.2
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.1e-132 475.7 327 71.9
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 7.0e-132 474.6 314 74.8
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 7.0e-132 474.6 358 67.6
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 9.1e-132 474.2 326 75.5
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.2e-131 473.8 332 72.3
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.2e-131 473.8 370 67.0
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.6e-131 472.6 359 68.2
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.6e-131 472.6 373 66.5
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 3.5e-131 472.2 331 71.3
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 4.5e-131 471.9 344 68.9
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 4.5e-131 471.9 360 68.6
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.0e-130 470.7 324 71.9
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 2.2e-130 469.5 352 69.6
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.2e-130 469.5 359 68.0
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.9e-130 469.2 352 67.9
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 5.0e-130 468.4 354 67.5
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.1e-129 467.2 328 70.7
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.5e-129 466.1 329 69.9
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 5.5e-129 464.9 332 71.1
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 1.2e-128 463.8 303 73.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 4.7e-128 461.8 351 68.7
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.0e-127 460.7 351 68.1
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.4e-127 460.3 359 66.3
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.3e-127 459.5 344 67.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 2.3e-127 459.5 299 74.6
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 6.7e-127 458.0 352 67.0
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 8.8e-127 457.6 327 71.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 8.8e-127 457.6 357 66.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.1e-126 457.2 373 64.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.5e-126 456.8 355 66.5
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.5e-126 456.8 364 66.8
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 4.4e-126 455.3 353 66.9
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 5.7e-126 454.9 351 66.7
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 3.7e-125 452.2 299 72.9
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.4e-124 450.3 283 76.3
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 5.3e-124 448.4 339 67.3
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.5e-123 445.7 358 65.1
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.9e-123 444.9 360 65.8
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.9e-121 439.9 357 66.4
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 3.2e-121 439.1 307 71.7
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.4e-116 423.7 226 85.8
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.8e-116 423.3 363 62.8
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 2.7e-115 419.5 341 63.3
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.9e-113 413.3 335 65.7
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.4e-113 411.0 324 64.8
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.8e-111 406.8 386 58.3
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 9.8e-110 401.0 406 55.4
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.4e-108 396.4 367 58.0
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 3.1e-108 396.0 361 59.3
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 5.9e-107 391.7 282 71.6
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.3e-106 389.8 298 64.4
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.8e-104 382.9 291 69.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.0e-103 379.4 258 69.8
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.2e-103 378.6 297 62.6
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.6e-102 376.3 295 64.1
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.7e-98 363.6 251 68.1
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.1e-96 356.7 253 68.4
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.4e-92 343.2 220 72.3
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 2.1e-88 330.1 320 58.1
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 3.6e-88 329.3 245 66.5
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.2e-83 314.3 255 62.4
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 8.1e-80 301.6 275 60.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.1e-73 281.2 235 64.7
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.1e-71 273.1 236 64.8
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 8.9e-71 271.6 290 49.0
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 9.9e-70 268.1 214 59.3
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 9.9e-70 268.1 240 60.0
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.8e-61 239.6 199 56.3
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.1e-60 238.0 201 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.0e-58 231.5 200 56.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.7e-58 230.7 210 55.2
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.1e-58 229.2 190 57.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.6e-56 224.2 195 56.9
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.0e-50 204.9 357 40.1
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.3e-50 204.5 209 49.3
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 5.1e-50 202.6 120 80.0
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 9.6e-49 198.4 297 44.8
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.2e-40 169.1 183 57.4
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.4e-39 167.9 114 65.8
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.2e-37 160.6 174 49.4
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 7.1e-36 155.6 97 70.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.7e-35 153.7 100 71.0
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 4.3e-33 146.4 112 64.3
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.1e-28 131.7 68 86.8
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 2.2e-24 117.5 114 54.4
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 2.1e-19 100.9 100 55.0
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 8.8e-18 95.5 94 56.4
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.7e-16 91.3 122 46.7
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.1e-15 88.6 50 78.0
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 9.1e-15 85.5 65 58.5
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.8e-13 80.1 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 7.2e-12 75.9 81 46.9
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 3.3e-09 67.0 70 54.3
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.7e-06 55.8 53 56.6


User provided reference genes

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