Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G229300 Theobroma cacao HOM05D000097 ORTHO05D000041 3.0e-102 375.2 187 100.0
Duzib235G0681 Durio zibethinus HOM05D000097 ORTHO05D000041 1.1e-72 276.9 179 77.7
COL.COLO4_31842 Corchorus olitorius HOM05D000097 ORTHO05D000041 3.6e-63 245.4 177 70.1
Gohir.D06G158000 Gossypium hirsutum HOM05D000097 ORTHO05D000041 6.8e-54 214.5 182 61.0
Gohir.D06G158100 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.0e-53 213.0 179 60.9
Gohir.A06G151832 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.4e-53 212.2 179 61.5
Gorai.010G184600 Gossypium raimondii HOM05D000097 ORTHO05D000041 5.7e-53 211.5 179 60.3
Gohir.D10G010400 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.5e-50 202.2 180 59.4
Gorai.011G011400 Gossypium raimondii HOM05D000097 ORTHO05D000041 3.5e-50 202.2 180 58.9
Gorai.010G184500 Gossypium raimondii HOM05D000097 ORTHO05D000041 1.0e-49 200.7 181 57.5
Thecc.06G229000 Theobroma cacao HOM05D000097 ORTHO05D000041 1.9e-48 196.4 181 56.4
Gohir.A10G010700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.2e-48 195.7 182 58.2
COL.COLO4_31839 Corchorus olitorius HOM05D000097 ORTHO05D000041 4.0e-46 188.7 168 58.3
Duzib235G1060 Durio zibethinus HOM05D000097 ORTHO05D000041 2.6e-45 186.0 175 53.7
COL.COLO4_31840 Corchorus olitorius HOM05D000097 ORTHO05D000041 7.7e-42 174.5 162 53.7
Thecc.06G229100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.0e-38 164.1 162 54.3
Gohir.A06G151700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 6.6e-33 144.8 180 46.7
CiPaw.10G075100 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.4e-27 127.1 186 37.1
CiPaw.10G075000 Carya illinoinensis HOM05D000097 ORTHO05D000041 3.5e-26 122.5 175 36.6
Haze_06865 Corylus avellana HOM05D000097 ORTHO05D000041 6.6e-25 118.2 179 38.5
Haze_06867 Corylus avellana HOM05D000097 ORTHO05D000041 3.1e-22 109.4 183 36.1
Cfa000146 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.7e-20 103.6 143 40.6
Haze_06879 Corylus avellana HOM05D000097 ORTHO05D000041 4.9e-20 102.1 166 37.3
Cfa000153 Carpinus fangiana HOM05D000097 ORTHO05D000041 4.1e-19 99.0 158 36.7
QL05p071595 Quercus lobata HOM05D000097 ORTHO05D000041 1.2e-18 97.4 167 34.1
Cfa000151 Carpinus fangiana HOM05D000097 ORTHO05D000041 4.6e-18 95.5 154 36.4
Prupe.8G029400 Prunus persica HOM05D000097 ORTHO05D000041 1.1e-16 90.9 153 33.3
QL05p071487 Quercus lobata HOM05D000097 ORTHO05D000041 7.3e-16 88.2 164 32.9
Cfa000154 Carpinus fangiana HOM05D000097 ORTHO05D000041 9.5e-16 87.8 165 32.1
MD10G1327800 Malus domestica HOM05D000097 ORTHO05D000041 1.2e-15 87.4 184 30.4
MD10G1327600 Malus domestica HOM05D000097 ORTHO05D000041 3.6e-15 85.9 189 30.7
Prupe.4G014300 Prunus persica HOM05D000097 ORTHO05D000041 4.7e-15 85.5 165 32.1
QL05p071217 Quercus lobata HOM05D000097 ORTHO05D000041 6.2e-15 85.1 145 33.1
Haze_06840 Corylus avellana HOM05D000097 ORTHO05D000041 8.1e-15 84.7 165 31.5
Haze_06836 Corylus avellana HOM05D000097 ORTHO05D000041 1.1e-14 84.3 165 31.5
Potri.015G119401 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.1e-14 84.3 167 31.7
MD05G1025600 Malus domestica HOM05D000097 ORTHO05D000041 1.4e-14 84.0 162 35.8
MD05G1353800 Malus domestica HOM05D000097 ORTHO05D000041 1.4e-14 84.0 172 30.8
Prupe.4G014200 Prunus persica HOM05D000097 ORTHO05D000041 1.4e-14 84.0 170 32.4
Prupe.8G030300 Prunus persica HOM05D000097 ORTHO05D000041 1.4e-14 84.0 152 33.6
MD09G1059800 Malus domestica HOM05D000097 ORTHO05D000041 5.2e-14 82.0 186 30.1
Atru.chr1.1016 Acer truncatum HOM05D000097 ORTHO05D000041 8.9e-14 81.3 174 31.6
Potri.004G003401 Populus trichocarpa HOM05D000097 ORTHO05D000041 8.9e-14 81.3 161 29.2
Cpa.g.c30992.2 Carica papaya HOM05D000097 ORTHO05D000041 1.5e-13 80.5 119 42.9
Haze_06864 Corylus avellana HOM05D000097 ORTHO05D000041 1.5e-13 80.5 165 30.9
Atru.chr1.985 Acer truncatum HOM05D000097 ORTHO05D000041 9.9e-13 77.8 151 31.8
MD05G1354800 Malus domestica HOM05D000097 ORTHO05D000041 2.2e-12 76.6 172 31.4
VMungo0331G1839 Vigna mungo HOM05D000097 ORTHO05D000041 3.7e-12 75.9 162 26.5
Dinv13946 Davidia involucrata HOM05D000097 ORTHO05D000041 4.9e-12 75.5 167 29.9
Dinv23674 Davidia involucrata HOM05D000097 ORTHO05D000041 8.4e-12 74.7 163 30.1
Cfa000179 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.1e-11 74.3 164 30.5
QL05p070490 Quercus lobata HOM05D000097 ORTHO05D000041 1.1e-11 74.3 161 32.9
Atru.chr1.1018 Acer truncatum HOM05D000097 ORTHO05D000041 1.4e-11 73.9 185 27.6
QL05p070873 Quercus lobata HOM05D000097 ORTHO05D000041 1.4e-11 73.9 177 31.1
Atru.chr10.2324 Acer truncatum HOM05D000097 ORTHO05D000041 2.4e-11 73.2 145 33.1
Lj6g0017328 Lotus japonicus HOM05D000097 ORTHO05D000041 3.2e-11 72.8 172 29.1
Ciclev10010540m.g Citrus clementina HOM05D000097 ORTHO05D000041 4.1e-11 72.4 163 30.7
Dinv13945 Davidia involucrata HOM05D000097 ORTHO05D000041 4.1e-11 72.4 184 27.2
Aqoxy1G02935 Aquilegia oxysepala HOM05D000097 ORTHO05D000041 5.4e-11 72.0 136 32.4
Cfa000145 Carpinus fangiana HOM05D000097 ORTHO05D000041 5.4e-11 72.0 163 29.4
QL05p070510 Quercus lobata HOM05D000097 ORTHO05D000041 7.1e-11 71.6 177 30.5
GSVIVG01005100001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.1e-11 71.6 150 30.7
Cfa000156 Carpinus fangiana HOM05D000097 ORTHO05D000041 9.2e-11 71.2 144 31.2
ATR0665G363 Amborella trichopoda HOM05D000097 ORTHO05D000041 1.6e-10 70.5 185 31.4
arahy.Tifrunner.gnm1.ann1.F0IIPX Arachis hypogaea HOM05D000097 ORTHO05D000041 1.6e-10 70.5 163 27.0
Haze_06873 Corylus avellana HOM05D000097 ORTHO05D000041 1.6e-10 70.5 166 29.5
Phvul.010G033100 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 1.6e-10 70.5 163 26.4
GSVIVG01028837001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.6e-10 70.5 146 31.5
Lj1C52T3 Lonicera japonica HOM05D000097 ORTHO05D000041 2.1e-10 70.1 166 28.9
Phvul.010G033000 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 2.1e-10 70.1 164 28.0
GSVIVG01012268001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.7e-10 69.7 167 28.1
Cfa000149 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.5e-10 69.3 161 28.0
Lsat_1_v5_gn_7_14680 Lactuca sativa HOM05D000097 ORTHO05D000041 3.5e-10 69.3 165 29.7
MBI04_g26290_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 3.5e-10 69.3 162 27.8
TPR.G29018 Trifolium pratense HOM05D000097 ORTHO05D000041 3.5e-10 69.3 167 25.7
Lsat_1_v5_gn_7_14780 Lactuca sativa HOM05D000097 ORTHO05D000041 4.6e-10 68.9 159 28.9
arahy.Tifrunner.gnm1.ann1.66H3JJ Arachis hypogaea HOM05D000097 ORTHO05D000041 6.0e-10 68.6 149 26.8
arahy.Tifrunner.gnm1.ann1.G0YCKG Arachis hypogaea HOM05D000097 ORTHO05D000041 6.0e-10 68.6 127 31.5
Ciclev10007907m.g Citrus clementina HOM05D000097 ORTHO05D000041 6.0e-10 68.6 161 29.2
Ciclev10008038m.g Citrus clementina HOM05D000097 ORTHO05D000041 6.0e-10 68.6 161 29.2
arahy.Tifrunner.gnm1.ann1.D7UV2U Arachis hypogaea HOM05D000097 ORTHO05D000041 7.8e-10 68.2 149 26.2
Lsat_1_v5_gn_4_61781 Lactuca sativa HOM05D000097 ORTHO05D000041 7.8e-10 68.2 164 28.7
Rhsim06G0147300 Rhododendron simsii HOM05D000097 ORTHO05D000041 7.8e-10 68.2 159 28.3
Atru.chr10.2322 Acer truncatum HOM05D000097 ORTHO05D000041 1.0e-09 67.8 143 30.8
Lsat_1_v5_gn_7_15241 Lactuca sativa HOM05D000097 ORTHO05D000041 1.0e-09 67.8 165 27.9
TAR362G0859 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.0e-09 67.8 149 30.2
CiPaw.10G075200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.3e-09 67.4 160 28.8
Dinv20112 Davidia involucrata HOM05D000097 ORTHO05D000041 1.3e-09 67.4 174 27.6
Lsat_1_v5_gn_7_14820 Lactuca sativa HOM05D000097 ORTHO05D000041 1.3e-09 67.4 145 29.7
QL05p070833 Quercus lobata HOM05D000097 ORTHO05D000041 1.7e-09 67.0 143 32.9
Atru.chr10.2319 Acer truncatum HOM05D000097 ORTHO05D000041 3.0e-09 66.2 118 32.2
Haze_04651 Corylus avellana HOM05D000097 ORTHO05D000041 3.0e-09 66.2 146 29.5
Glyma.15G086800 Glycine max HOM05D000097 ORTHO05D000041 3.0e-09 66.2 182 21.4
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.0e-09 66.2 170 28.2
Atru.chr10.2326 Acer truncatum HOM05D000097 ORTHO05D000041 3.9e-09 65.9 166 25.9
Cfa000150 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.9e-09 65.9 161 27.3
Hma1.2p1_0875F.1_g231340 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.9e-09 65.9 145 27.6
Potri.015G118600 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.9e-09 65.9 165 30.3
CSS0041661 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 5.1e-09 65.5 171 26.3
Dinv20111 Davidia involucrata HOM05D000097 ORTHO05D000041 5.1e-09 65.5 167 26.9
Glyma.16G082000 Glycine max HOM05D000097 ORTHO05D000041 5.1e-09 65.5 148 27.0
vmacro12277 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 5.1e-09 65.5 160 28.8
AUR62012416 Chenopodium quinoa HOM05D000097 ORTHO05D000041 6.6e-09 65.1 146 27.4
AUR62031540 Chenopodium quinoa HOM05D000097 ORTHO05D000041 6.6e-09 65.1 146 27.4
Dinv13944 Davidia involucrata HOM05D000097 ORTHO05D000041 6.6e-09 65.1 126 33.3
QL05p071248 Quercus lobata HOM05D000097 ORTHO05D000041 6.6e-09 65.1 87 40.2
Atru.chr10.2320 Acer truncatum HOM05D000097 ORTHO05D000041 8.6e-09 64.7 142 31.0
Cfa000912 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.1e-08 64.3 147 27.9
CiPaw.09G099300 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.1e-08 64.3 157 28.7
Potri.004G003600 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.1e-08 64.3 166 25.9
QL05p071327 Quercus lobata HOM05D000097 ORTHO05D000041 1.1e-08 64.3 142 26.8
Cfa000142 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.5e-08 63.9 163 27.6
Lj1C54T1 Lonicera japonica HOM05D000097 ORTHO05D000041 1.5e-08 63.9 157 27.4
Ah.16g104570 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.9e-08 63.5 165 26.1
Lj1A53G41 Lonicera japonica HOM05D000097 ORTHO05D000041 1.9e-08 63.5 160 29.4
Lj6g0005075 Lotus japonicus HOM05D000097 ORTHO05D000041 1.9e-08 63.5 158 27.8
TAR627G0755 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.9e-08 63.5 151 26.5
Lj1C52T4 Lonicera japonica HOM05D000097 ORTHO05D000041 2.5e-08 63.2 176 27.8
QL05p034733 Quercus lobata HOM05D000097 ORTHO05D000041 2.5e-08 63.2 145 28.3
QL05p070420 Quercus lobata HOM05D000097 ORTHO05D000041 3.3e-08 62.8 125 35.2
Aqoxy1G02931 Aquilegia oxysepala HOM05D000097 ORTHO05D000041 4.3e-08 62.4 181 25.4
Dinv23668 Davidia involucrata HOM05D000097 ORTHO05D000041 4.3e-08 62.4 116 36.2
QL05p070921 Quercus lobata HOM05D000097 ORTHO05D000041 5.6e-08 62.0 142 25.4
QL05p070771 Quercus lobata HOM05D000097 ORTHO05D000041 7.3e-08 61.6 170 28.8
Lj1C53G9 Lonicera japonica HOM05D000097 ORTHO05D000041 9.6e-08 61.2 161 29.2
MBI04_g27907_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 9.6e-08 61.2 136 29.4
Sabra02G0039800 Salix brachista HOM05D000097 ORTHO05D000041 9.6e-08 61.2 166 28.9
CAN.G84.45 Capsicum annuum HOM05D010878 ORTHO05D009673 1.2e-07 60.8 130 34.6
Hma1.2p1_1176F.1_g264290 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.2e-07 60.8 165 28.5
MBI04_g26286_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.2e-07 60.8 171 25.1
Sopen05g013970 Solanum pennellii HOM05D000097 ORTHO05D000041 1.2e-07 60.8 157 27.4
Thecc.08G068400 Theobroma cacao HOM05D000097 ORTHO05D000041 1.2e-07 60.8 96 33.3
Potri.011G016100 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.6e-07 60.5 161 27.3
Haze_06880 Corylus avellana HOM05D000097 ORTHO05D000041 2.1e-07 60.1 146 30.1
FAN27G0465 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.8e-07 59.7 157 26.8
Glyma.07G133400 Glycine max HOM05D000097 ORTHO05D000041 2.8e-07 59.7 170 27.6
Lsat_1_v5_gn_7_14740 Lactuca sativa HOM05D000097 ORTHO05D000041 2.8e-07 59.7 149 28.2
Lj1C54T4 Lonicera japonica HOM05D000097 ORTHO05D000041 2.8e-07 59.7 174 28.7
Potri.006G281700 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.8e-07 59.7 160 28.1
Potri.006G281800 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.8e-07 59.7 161 27.3
Potri.011G016200 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.8e-07 59.7 160 28.1
QL12p041961 Quercus lobata HOM05D000097 ORTHO05D000041 2.8e-07 59.7 171 28.1
DCAR_001142 Daucus carota HOM05D000097 ORTHO05D000041 3.6e-07 59.3 166 27.7
Manes.15G116900 Manihot esculenta HOM05D000097 ORTHO05D000041 3.6e-07 59.3 133 27.1
QL05p070388 Quercus lobata HOM05D000097 ORTHO05D000041 3.6e-07 59.3 137 29.9
Hma1.2p1_0875F.1_g231350 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 4.7e-07 58.9 147 26.5
PSO675G3213 Papaver somniferum HOM05D000097 ORTHO05D009673 4.7e-07 58.9 162 29.0
QL12p041792 Quercus lobata HOM05D000097 ORTHO05D000041 4.7e-07 58.9 115 32.2
CiPaw.15G182200 Carya illinoinensis HOM05D000097 ORTHO05D000041 6.2e-07 58.5 166 27.7
Prupe.7G089200 Prunus persica HOM05D000097 ORTHO05D000041 6.2e-07 58.5 160 24.4
PGSC0003DMG400023040 Solanum tuberosum HOM05D000097 ORTHO05D000041 6.2e-07 58.5 122 32.8
Hma1.2p1_0172F.1_g075910 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 8.1e-07 58.2 111 32.4
Potri.011G015801 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.1e-06 57.8 160 28.8
Potri.006G281600 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.4e-06 57.4 159 27.0
Potri.011G016300 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.4e-06 57.4 159 27.0
CiPaw.09G099000 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.8e-06 57.0 145 28.3
Migut.N02030 Erythranthe guttata HOM05D000097 ORTHO05D000041 1.8e-06 57.0 158 25.9
Eucgr.K00701 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.8e-06 57.0 129 32.6
QL03p055709 Quercus lobata HOM05D000097 ORTHO05D000041 1.8e-06 57.0 149 27.5
RcHm_v2.0_Chr6g0290151 Rosa chinensis HOM05D000097 ORTHO05D000041 1.8e-06 57.0 161 28.0
Atru.chr10.2318 Acer truncatum HOM05D000097 ORTHO05D000041 2.4e-06 56.6 122 32.0
ATR0049G029 Amborella trichopoda HOM05D000097 ORTHO05D000041 2.4e-06 56.6 177 25.4
CiPaw.15G182000 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.4e-06 56.6 135 31.9
MELO3C002970.2 Cucumis melo HOM05D000097 ORTHO05D000041 2.4e-06 56.6 115 31.3
MELO3C027378.2 Cucumis melo HOM05D000995 ORTHO05D001773 2.4e-06 56.6 143 27.3
MD05G1353500 Malus domestica HOM05D000097 ORTHO05D000041 2.4e-06 56.6 112 32.1
Manes.16G002500 Manihot esculenta HOM05D000097 ORTHO05D000041 2.4e-06 56.6 94 34.0
PSO837G0048 Papaver somniferum HOM05D000097 ORTHO05D009673 2.4e-06 56.6 109 31.2
Cc00_g25640 Coffea canephora HOM05D000097 ORTHO05D000041 3.1e-06 56.2 155 29.0
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 3.1e-06 56.2 139 28.1
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 3.1e-06 56.2 144 27.1
Ciclev10010739m.g Citrus clementina HOM05D000097 ORTHO05D000041 4.0e-06 55.8 162 26.5
Dinv05551 Davidia involucrata HOM05D000097 ORTHO05D000041 4.0e-06 55.8 151 26.5
Eucgr.K00699 Eucalyptus grandis HOM05D000264 ORTHO05D000152 4.0e-06 55.8 135 29.6
FAN25G3460 Fragaria x ananassa HOM05D001218 ORTHO05D003142 4.0e-06 55.8 160 23.8
Gohir.D08G072900 Gossypium hirsutum HOM05D000097 ORTHO05D000041 4.0e-06 55.8 105 28.6
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 4.0e-06 55.8 144 25.0
CiPaw.09G099200 Carya illinoinensis HOM05D000097 ORTHO05D000041 5.2e-06 55.5 117 29.9
Cc11_g05990 Coffea canephora HOM05D000097 ORTHO05D009673 5.2e-06 55.5 144 29.2
Eucgr.K00693 Eucalyptus grandis HOM05D000264 ORTHO05D000152 5.2e-06 55.5 126 31.0
PSO170G0583 Papaver somniferum HOM05D000097 ORTHO05D000041 5.2e-06 55.5 146 26.7
Potri.002G048832 Populus trichocarpa HOM05D000097 ORTHO05D000041 5.2e-06 55.5 131 29.0
Sabra15G0139400 Salix brachista HOM05D000097 ORTHO05D000041 5.2e-06 55.5 139 27.3
PSO063G5786 Papaver somniferum HOM05D000097 ORTHO05D009673 6.8e-06 55.1 108 31.5
Glyma.12G111400 Glycine max HOM05D000264 ORTHO05D000152 8.9e-06 54.7 121 24.8
PSO017G1497 Papaver somniferum HOM05D000097 ORTHO05D009673 8.9e-06 54.7 108 32.4
QL12p041840 Quercus lobata HOM05D000097 ORTHO05D000041 8.9e-06 54.7 159 27.0
vmacro12272 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 8.9e-06 54.7 164 23.2


User provided reference genes

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