Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 7.9e-97 357.1 176 100.0
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 4.8e-86 321.2 176 90.3
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.3e-75 286.6 184 82.1
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 1.7e-75 286.2 184 81.5
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.5e-71 273.1 177 80.8
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.6e-68 263.1 177 78.0
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 5.0e-67 258.1 172 74.4
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 2.5e-66 255.8 172 73.8
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.2e-65 253.4 172 71.5
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 6.1e-65 251.1 172 72.1
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 8.0e-65 250.8 166 74.1
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 8.0e-65 250.8 166 74.1
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.4e-64 250.0 171 71.9
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 6.8e-64 247.7 172 70.9
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 3.4e-63 245.4 172 69.8
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 9.8e-63 243.8 171 72.5
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 9.8e-63 243.8 171 72.5
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 6.3e-62 241.1 175 69.7
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 8.3e-62 240.7 173 73.4
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 1.4e-61 240.0 166 72.3
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 2.4e-61 239.2 178 70.2
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 3.1e-61 238.8 172 66.9
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 4.1e-61 238.4 161 73.9
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 9.2e-61 237.3 180 68.9
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 2.0e-60 236.1 166 72.3
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 4.5e-60 235.0 168 70.8
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 4.5e-60 235.0 175 69.1
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 2.3e-59 232.6 166 71.7
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 2.9e-59 232.3 152 76.3
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 6.6e-59 231.1 173 67.6
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 6.6e-59 231.1 166 69.3
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 8.6e-59 230.7 173 67.1
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 1.1e-58 230.3 166 68.7
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 1.5e-58 229.9 166 71.1
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.9e-58 229.6 167 68.9
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 4.3e-58 228.4 169 68.6
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 2.8e-57 225.7 161 70.8
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 4.7e-57 224.9 174 67.2
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 8.0e-57 224.2 132 81.1
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 3.0e-56 222.2 130 86.2
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 4.0e-56 221.9 231 52.8
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 3.4e-55 218.8 204 61.8
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 7.5e-55 217.6 176 67.0
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 1.7e-54 216.5 130 83.1
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 4.9e-54 214.9 179 65.4
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 1.1e-53 213.8 134 78.4
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 2.4e-53 212.6 167 64.7
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 9.2e-53 210.7 120 82.5
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.2e-52 210.3 153 69.3
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 2.7e-52 209.1 150 70.0
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 3.5e-52 208.8 150 70.7
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 3.5e-52 208.8 175 64.0
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 4.6e-52 208.4 150 69.3
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 4.6e-52 208.4 150 70.7
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 7.8e-52 207.6 134 75.4
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.0e-51 207.2 166 65.7
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 1.3e-51 206.8 137 75.9
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 1.3e-51 206.8 137 75.9
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 1.7e-51 206.5 137 75.9
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 1.7e-51 206.5 137 75.9
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 1.7e-51 206.5 137 75.9
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 2.3e-51 206.1 167 62.3
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 6.6e-51 204.5 168 63.7
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 8.6e-51 204.1 127 78.0
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 3.3e-50 202.2 136 72.1
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 5.6e-50 201.4 151 70.2
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 9.5e-50 200.7 166 62.0
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 2.1e-49 199.5 120 80.0
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.1e-49 199.5 125 76.0
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 2.1e-49 199.5 166 63.9
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 5.2e-48 194.9 167 60.5
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 8.9e-48 194.1 133 70.7
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 2.0e-47 193.0 150 69.3
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 2.9e-46 189.1 120 75.8
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 4.9e-46 188.3 120 75.8
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 6.4e-46 188.0 196 58.2
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 5.4e-45 184.9 148 64.9
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 9.2e-45 184.1 121 74.4
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 1.2e-44 183.7 127 72.4
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 2.7e-44 182.6 173 61.8
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.0e-43 178.3 120 71.7
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 2.8e-41 172.6 121 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 1.1e-40 170.6 120 66.7
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 8.9e-40 167.5 167 56.9
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.4e-39 165.2 177 56.5
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 9.9e-39 164.1 122 68.9
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 1.4e-37 160.2 132 60.6
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 9.2e-37 157.5 118 60.2
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 8.6e-35 151.0 122 61.5
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 1.5e-34 150.2 122 63.1
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 1.2e-33 147.1 85 82.4
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 6.8e-32 141.4 116 61.2
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 5.4e-29 131.7 105 62.9
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 2.7e-28 129.4 121 59.5
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 2.7e-28 129.4 160 46.2
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 4.9e-22 108.6 82 64.6
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 8.4e-22 107.8 90 60.0
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 7.3e-18 94.7 125 42.4
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 2.6e-15 86.3 45 91.1
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 5.8e-15 85.1 80 55.0
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 1.3e-14 84.0 136 39.0
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.4e-13 79.7 125 36.8
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 4.2e-13 79.0 48 79.2
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 7.1e-13 78.2 39 92.3
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.8e-11 73.6 84 50.0
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 4.3e-10 68.9 39 76.9
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 2.1e-09 66.6 184 29.9
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.4e-08 63.2 119 28.6
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.2e-06 56.6 127 29.9


User provided reference genes

Program Settings