Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G221500 Theobroma cacao HOM05D008941 ORTHO05D010842 1.4e-30 135.6 64 100.0
Gohir.A05G170700 Gossypium hirsutum HOM05D008941 ORTHO05D010842 8.6e-17 89.7 68 69.1
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 1.4e-14 82.4 62 67.7
Gohir.D05G173750 Gossypium hirsutum HOM05D008941 ORTHO05D010842 4.1e-11 70.9 70 55.7
Gorai.009G179000 Gossypium raimondii HOM05D008941 ORTHO05D010842 4.1e-11 70.9 70 55.7
CSS0009089 Camellia sinensis var. sinensis HOM05D008941 ORTHO05D010842 1.3e-09 65.9 59 52.5
CSS0012780 Camellia sinensis var. sinensis HOM05D008941 ORTHO05D010842 1.3e-09 65.9 59 52.5
RcHm_v2.0_Chr2g0098221 Rosa chinensis HOM05D008941 ORTHO05D010842 5.0e-09 63.9 65 53.8
Medtr4g132220 Medicago truncatula HOM05D024512 ORTHO05D010842 8.6e-09 63.2 41 70.7
Thecc.01G010500 Theobroma cacao HOM05D008941 ORTHO05D010842 1.5e-08 62.4 63 50.8
Lalb_Chr07g0177191 Lupinus albus HOM05D024512 ORTHO05D010842 2.5e-08 61.6 59 55.9
MBI18_g23947_MAGBIO Magnolia biondii HOM05D008503 ORTHO05D010842 3.3e-08 61.2 59 50.8
FAN23G1674 Fragaria x ananassa HOM05D008941 ORTHO05D010842 4.3e-08 60.8 46 56.5
BcaNung04352 Brassica carinata HOM05D008941 ORTHO05D010842 1.2e-07 59.3 61 50.8
BcaNung05046 Brassica carinata HOM05D008941 ORTHO05D010842 1.2e-07 59.3 61 50.8
C01p03270 Brassica napus HOM05D008941 ORTHO05D010842 1.2e-07 59.3 60 46.7
MD02G1122600 Malus domestica HOM05D008941 ORTHO05D010842 1.2e-07 59.3 32 78.1
BraA03t15456Z Brassica rapa HOM05D008941 ORTHO05D010842 1.6e-07 58.9 60 50.0
COL.COLO4_22503 Corchorus olitorius HOM05D008941 ORTHO05D010842 1.6e-07 58.9 67 46.3
ATR0794G019 Amborella trichopoda HOM05D008941 ORTHO05D010842 2.1e-07 58.5 60 43.3
BolC1t00313H Brassica oleracea HOM05D008941 ORTHO05D010842 2.1e-07 58.5 60 48.3
Prupe.7G175900 Prunus persica HOM05D008941 ORTHO05D010842 2.8e-07 58.2 37 64.9
AT4G35783 Arabidopsis thaliana HOM05D008941 ORTHO05D010842 3.6e-07 57.8 60 50.0
A01p02930 Brassica napus HOM05D008941 ORTHO05D010842 3.6e-07 57.8 60 48.3
BraA01t00276Z Brassica rapa HOM05D008941 ORTHO05D010842 3.6e-07 57.8 60 48.3
CARHR244140 Cardamine hirsuta HOM05D008941 ORTHO05D010842 3.6e-07 57.8 60 48.3
Lj4g0017336 Lotus japonicus HOM05D024512 ORTHO05D010842 3.6e-07 57.8 34 79.4
Nn6g31885 Nelumbo nucifera HOM05D008941 ORTHO05D010842 3.6e-07 57.8 64 50.0
AL7G15310 Arabidopsis lyrata HOM05D008941 ORTHO05D010842 6.2e-07 57.0 60 48.3
Carub.0007s0446 Capsella rubella HOM05D008941 ORTHO05D010842 6.2e-07 57.0 61 52.5
Aqoxy6G01918 Aquilegia oxysepala HOM05D008941 ORTHO05D010842 8.1e-07 56.6 66 47.0
BcaNung04354 Brassica carinata HOM05D008941 ORTHO05D010842 8.1e-07 56.6 62 53.2
Sed0000767 Sechium edule HOM05D008941 ORTHO05D010842 8.1e-07 56.6 61 44.3
C07p61340 Brassica napus HOM05D008941 ORTHO05D010842 1.1e-06 56.2 62 53.2
BolC7t46560H Brassica oleracea HOM05D008941 ORTHO05D010842 1.1e-06 56.2 62 53.2
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 1.4e-06 55.8 39 53.8
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 1.4e-06 55.8 37 56.8
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.4e-06 55.8 34 61.8
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.8e-06 55.5 35 65.7
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.8e-06 55.5 35 65.7
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.8e-06 55.5 36 58.3
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.8e-06 55.5 37 64.9
Lj2g0015207 Lotus japonicus HOM05D008941 ORTHO05D010842 1.8e-06 55.5 64 42.2
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.8e-06 55.5 36 58.3
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 1.8e-06 55.5 38 55.3
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.8e-06 55.5 35 60.0
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.3e-06 55.1 35 60.0
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 2.3e-06 55.1 35 60.0
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 2.3e-06 55.1 35 62.9
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 3.1e-06 54.7 35 60.0
Lj3g0004291 Lotus japonicus HOM05D001415 ORTHO05D001075 3.1e-06 54.7 48 56.2
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.1e-06 54.7 35 62.9
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 4.0e-06 54.3 44 47.7
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 4.0e-06 54.3 35 60.0
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.0e-06 54.3 35 60.0
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.2e-06 53.9 34 58.8
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.2e-06 53.9 35 57.1
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.2e-06 53.9 35 57.1
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.2e-06 53.9 35 57.1
Lalb_Chr13g0304221 Lupinus albus HOM05D024512 ORTHO05D010842 5.2e-06 53.9 59 49.2
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.2e-06 53.9 34 58.8
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.2e-06 53.9 35 62.9
Sp7g33560 Schrenkiella parvula HOM05D008941 ORTHO05D010842 5.2e-06 53.9 62 48.4
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 5.2e-06 53.9 35 65.7
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 6.8e-06 53.5 31 64.5
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 6.8e-06 53.5 36 55.6
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.8e-06 53.5 36 55.6
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.8e-06 53.5 36 55.6
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.8e-06 53.5 36 55.6
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 6.8e-06 53.5 35 60.0
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 6.8e-06 53.5 36 58.3
THA.LOC109116896 Tarenaya hassleriana HOM05D008941 ORTHO05D010842 6.8e-06 53.5 63 42.9
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 8.9e-06 53.1 34 58.8
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 8.9e-06 53.1 35 60.0


User provided reference genes

Program Settings