Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.1e-73 278.9 132 100.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.5e-60 236.1 130 86.2
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 4.5e-52 208.0 116 85.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.6e-47 190.3 114 76.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.6e-47 190.3 114 76.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.7e-46 188.3 114 75.4
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 8.4e-43 177.2 114 77.2
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.7e-40 167.5 133 65.4
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 6.3e-38 161.0 128 63.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.4e-37 159.8 127 63.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.4e-37 159.8 125 64.0
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.1e-37 158.7 132 62.1
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.3e-37 157.9 125 64.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.6e-36 155.6 125 62.4
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.9e-35 152.1 127 58.3
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.5e-34 147.9 113 61.9
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.5e-34 147.9 132 58.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 2.7e-33 145.6 112 61.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.6e-33 145.2 128 58.6
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.0e-32 143.7 113 61.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.8e-32 142.9 128 61.7
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.0e-32 142.1 135 57.8
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.0e-32 142.1 130 56.9
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.7e-32 141.0 116 61.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.5e-31 139.8 134 56.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 7.4e-31 137.5 115 60.0
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-30 136.3 119 59.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.2e-30 136.0 119 58.8
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.2e-30 136.0 135 57.0
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.8e-30 135.6 115 58.3
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 8.2e-30 134.0 137 52.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.8e-29 132.9 121 57.9
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-29 132.9 137 51.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.0e-28 129.4 118 55.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 4.5e-28 128.3 120 58.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.7e-28 127.5 117 55.6
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 7.7e-28 127.5 130 53.1
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-27 126.7 117 55.6
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.3e-27 126.7 113 56.6
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.2e-27 125.9 139 49.6
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-26 123.2 117 53.8
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.6e-25 118.6 115 51.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.1e-25 117.9 116 50.9
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.4e-24 116.7 118 50.8
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 2.6e-23 112.5 123 49.6
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.3e-23 112.1 113 51.3
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.4e-23 110.9 117 53.0
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 7.4e-23 110.9 134 47.0
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.7e-22 109.8 119 47.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 8.2e-22 107.5 120 47.5
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.4e-21 106.7 120 46.7
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.8e-21 106.3 119 47.9
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.4e-21 105.9 130 44.6
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.1e-21 105.1 130 44.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.9e-21 104.4 114 45.6
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 6.9e-21 104.4 115 47.8
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.0e-20 102.8 110 52.7
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.9e-20 101.3 116 48.3
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.9e-20 101.3 116 48.3
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 5.9e-20 101.3 121 47.1
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.3e-19 100.1 114 43.0
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.3e-19 100.1 115 46.1
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.3e-19 100.1 114 43.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.0e-19 98.2 128 47.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 5.0e-19 98.2 113 48.7
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 6.5e-19 97.8 115 48.7
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-18 96.3 126 48.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.2e-18 95.5 128 43.8
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.2e-18 95.5 114 49.1
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 5.5e-18 94.7 115 47.8
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 7.2e-18 94.4 118 47.5
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 7.2e-18 94.4 118 46.6
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.4e-18 94.0 126 47.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.4e-18 94.0 113 42.5
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.1e-17 92.8 110 48.2
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.7e-17 92.4 114 43.9
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.6e-17 92.0 125 44.0
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.1e-17 91.3 126 44.4
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.1e-17 91.3 109 46.8
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 6.1e-17 91.3 125 43.2
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.0e-17 90.9 127 45.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 8.0e-17 90.9 139 42.4
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.0e-16 90.5 116 44.8
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-16 90.5 107 45.8
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.4e-16 90.1 124 44.4
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.4e-16 90.1 114 45.6
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.8e-16 89.7 110 43.6
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.3e-16 89.4 111 47.7
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.3e-16 89.4 107 45.8
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.7e-16 87.8 111 44.1
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.7e-16 87.8 111 44.1
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.5e-15 86.7 113 43.4
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.0e-15 86.3 126 40.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 2.6e-15 85.9 118 40.7
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.6e-15 85.9 120 43.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.6e-15 85.9 112 42.9
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.3e-15 85.5 125 39.2
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 3.3e-15 85.5 113 44.2
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 7.4e-15 84.3 109 44.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.7e-15 84.0 111 44.1
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 3.7e-14 82.0 96 52.1
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.1e-13 80.5 112 40.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.1e-13 80.5 124 39.5
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.4e-13 80.1 126 40.5
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 3.1e-13 79.0 116 37.9
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 7.0e-13 77.8 113 39.8
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 7.0e-13 77.8 113 39.8
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 7.0e-13 77.8 113 39.8
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 7.0e-13 77.8 126 39.7
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 9.1e-13 77.4 119 41.2
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.6e-12 76.6 131 37.4
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.0e-12 76.3 118 39.8
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.6e-12 75.9 116 41.4
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.6e-12 75.9 116 38.8
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.7e-12 74.3 113 38.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.0e-11 73.9 109 36.7
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-11 73.6 113 38.1
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.3e-11 73.6 132 37.9
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.7e-11 73.2 125 39.2
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.2e-11 72.8 121 35.5
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.0e-11 71.6 111 38.7
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.0e-11 71.6 111 38.7
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 5.0e-11 71.6 115 33.9
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.5e-11 71.2 129 34.9
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-10 70.5 125 36.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.1e-10 70.5 109 35.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.5e-10 70.1 107 38.3
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-10 69.7 109 39.4
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.5e-10 69.3 135 34.1
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.2e-10 68.9 123 37.4
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.5e-10 68.2 111 37.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 7.2e-10 67.8 126 34.9
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 7.2e-10 67.8 113 40.7
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.1e-09 66.2 116 39.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.6e-09 65.5 107 34.6
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 4.7e-09 65.1 113 36.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.7e-09 65.1 111 33.3
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 1.0e-08 63.9 108 36.1
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.0e-08 63.9 121 31.4
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.4e-08 63.5 116 32.8
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.8e-08 63.2 111 35.1
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.2e-08 61.6 113 38.1
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 8.8e-08 60.8 112 33.9
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 4.4e-07 58.5 142 33.1
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 7.5e-07 57.8 116 31.9
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 2.8e-06 55.8 106 33.0
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 8.2e-06 54.3 73 41.1


User provided reference genes

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