Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 3.5e-189 664.8 343 100.0
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 5.4e-174 614.4 343 91.0
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 3.5e-173 611.7 344 91.3
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.5e-168 596.3 342 88.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.5e-160 569.7 339 85.0
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 2.9e-159 565.5 343 84.0
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.3e-159 563.9 339 84.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-143 513.5 343 74.9
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.3e-143 513.5 343 74.9
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 2.7e-141 505.8 348 73.9
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 3.9e-140 501.9 354 70.9
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.1e-140 501.5 342 73.7
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.1e-139 500.4 342 77.8
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 4.3e-139 498.4 348 73.6
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.8e-138 495.7 338 72.8
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.2e-136 490.3 351 71.8
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.6e-136 489.2 323 74.6
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.4e-134 483.4 336 72.3
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.4e-134 483.4 333 71.5
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 7.1e-134 481.1 346 70.5
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 9.3e-134 480.7 347 69.7
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.2e-133 480.3 338 71.3
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.1e-133 479.6 341 69.5
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 3.0e-132 475.7 340 71.5
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 3.9e-132 475.3 322 73.6
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 5.1e-132 474.9 345 69.3
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 6.6e-132 474.6 338 69.2
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 6.6e-132 474.6 275 87.6
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 6.6e-132 474.6 314 73.9
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 2.5e-131 472.6 333 70.6
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 2.5e-131 472.6 331 71.3
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.3e-130 470.3 348 66.7
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.6e-130 469.9 337 67.7
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.6e-130 469.9 337 66.8
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 2.1e-130 469.5 345 67.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 8.1e-130 467.6 332 69.6
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.8e-129 466.5 344 69.8
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-129 466.1 342 67.3
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 3.1e-129 465.7 339 67.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 6.9e-129 464.5 338 69.8
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 6.9e-129 464.5 355 70.1
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 9.0e-129 464.2 316 70.3
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 9.0e-129 464.2 347 68.0
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.5e-128 463.4 337 66.8
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.0e-128 463.0 337 66.5
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.6e-128 462.6 347 65.7
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 4.5e-128 461.8 355 69.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 4.5e-128 461.8 355 69.0
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.9e-127 459.1 337 67.1
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 2.9e-127 459.1 323 71.5
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 8.4e-127 457.6 314 72.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 8.4e-127 457.6 329 69.3
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.4e-126 456.8 335 68.4
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 2.4e-126 456.1 341 66.6
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 3.2e-126 455.7 338 67.5
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 1.6e-125 453.4 314 69.7
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 1.6e-125 453.4 314 69.7
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 1.6e-125 453.4 314 69.7
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 2.7e-125 452.6 331 68.3
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.0e-125 451.4 337 67.1
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 3.9e-124 448.7 337 66.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 3.9e-124 448.7 337 66.2
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 5.1e-124 448.4 337 66.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 5.6e-123 444.9 337 65.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 5.6e-123 444.9 337 65.6
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 9.6e-123 444.1 345 65.5
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.1e-122 443.0 316 69.6
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.7e-122 442.2 318 70.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 8.1e-122 441.0 339 64.6
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 5.3e-121 438.3 334 65.6
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 5.3e-121 438.3 338 65.4
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 9.0e-121 437.6 338 65.4
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.0e-120 436.4 350 63.7
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.7e-119 433.3 345 62.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 4.9e-119 431.8 335 67.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 6.4e-119 431.4 343 64.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.4e-118 430.3 332 65.7
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.1e-117 426.4 343 63.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 4.6e-117 425.2 340 62.9
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 6.0e-117 424.9 339 63.1
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.0e-116 424.1 343 62.1
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.3e-116 423.7 328 64.0
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 1.8e-116 423.3 346 62.7
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 2.3e-116 422.9 317 65.3
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.3e-116 422.9 341 64.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.3e-116 422.9 343 63.0
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 6.7e-116 421.4 341 62.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 8.7e-116 421.0 335 63.3
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 3.3e-115 419.1 335 63.6
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 4.8e-114 415.2 276 73.9
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.1e-113 412.5 340 61.5
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 4.0e-113 412.1 340 60.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 4.0e-113 412.1 343 59.2
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 9.0e-113 411.0 338 60.9
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.4e-111 404.4 328 64.6
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.1e-110 401.4 338 62.4
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.6e-109 400.2 332 59.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.0e-109 398.3 269 72.1
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.3e-108 397.1 338 61.8
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.1e-108 395.2 321 62.0
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 7.4e-107 391.3 326 60.7
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.8e-106 389.4 322 64.6
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.8e-106 388.7 338 58.3
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 4.1e-105 385.6 331 58.9
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-104 383.3 345 56.5
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.4e-104 382.5 338 57.7
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.9e-103 379.4 314 61.8
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.9e-102 376.7 343 57.7
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.2e-102 375.9 331 59.5
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 7.2e-102 374.8 336 58.3
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 6.1e-101 371.7 342 57.0
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 3.9e-100 369.0 257 70.8
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 6.7e-100 368.2 333 56.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.3e-99 365.9 336 58.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 8.2e-98 361.3 332 57.8
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 5.3e-97 358.6 337 55.5
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.4e-96 355.9 303 60.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.5e-96 355.5 393 51.9
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.9e-96 355.1 342 52.6
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 2.9e-95 352.8 336 52.1
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.9e-95 352.8 332 56.9
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 3.8e-95 352.4 259 70.3
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 6.5e-95 351.7 332 56.6
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.9e-94 350.1 342 52.0
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.9e-94 350.1 336 53.9
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.1e-93 345.1 342 51.2
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 2.3e-92 343.2 262 62.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.1e-91 340.9 340 51.8
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 2.0e-91 340.1 344 52.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.6e-91 339.7 321 52.0
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.4e-91 339.0 342 51.8
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 9.7e-91 337.8 332 51.5
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-90 337.0 340 52.1
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 4.8e-90 335.5 343 51.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 4.1e-89 332.4 344 50.3
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 4.1e-89 332.4 344 50.3
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 7.0e-89 331.6 283 60.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.0e-87 327.8 312 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.5e-86 323.2 319 51.7
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-85 320.9 343 49.3
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.6e-85 320.5 341 50.4
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 8.0e-85 318.2 267 62.5
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.1e-83 314.3 323 48.3
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.4e-83 312.4 338 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.4e-81 307.4 321 47.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 9.4e-78 294.7 189 72.5
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.6e-77 293.9 179 74.9
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.0e-76 289.7 223 63.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.2e-76 288.9 191 71.2
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.5e-75 287.3 189 72.5
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.7e-71 273.9 189 66.7
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.2e-70 269.6 189 67.2
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 3.0e-68 263.1 314 47.1
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.3e-63 246.9 203 61.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.6e-63 245.4 183 64.5
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 8.6e-63 245.0 239 52.7
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.9e-60 235.0 184 64.1
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 2.6e-59 233.4 190 57.4
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.8e-52 210.7 228 53.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 2.0e-51 207.2 334 37.4
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 8.3e-50 201.8 322 37.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 1.1e-49 201.4 169 62.1
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.6e-40 171.0 156 57.7
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 7.8e-40 168.7 161 53.4
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 2.6e-35 153.7 172 47.1
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 3.2e-33 146.7 104 70.2
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-29 134.8 92 68.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 2.8e-29 133.7 310 33.5
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-28 131.3 89 67.4
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 3.1e-28 130.2 95 66.3
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-24 118.2 77 74.0
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.3e-23 114.8 81 64.2
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 8.7e-23 112.1 80 63.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-22 111.3 76 65.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-18 96.3 75 64.0
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 6.6e-15 85.9 67 65.7
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 4.3e-14 83.2 57 64.9
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 9.6e-14 82.0 48 79.2
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 1.1e-12 78.6 52 67.3
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 2.4e-12 77.4 74 56.8
COL.COLO4_35765 Corchorus olitorius HOM05D003755 ORTHO05D160063 3.5e-08 63.5 34 91.2
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.3e-07 61.6 77 44.2


User provided reference genes

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