Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.9e-221 771.2 394 100.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.5e-191 672.2 388 88.1
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 8.3e-187 657.1 385 86.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 8.3e-187 657.1 385 86.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.5e-185 651.7 388 86.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.4e-178 629.8 385 84.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.1e-167 593.6 392 77.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.6e-166 588.6 381 79.0
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.5e-164 583.2 381 79.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.5e-164 583.2 391 76.7
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 8.4e-163 577.4 361 80.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.9e-162 576.2 421 74.1
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 3.2e-162 575.5 372 79.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 5.4e-162 574.7 390 75.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 6.0e-161 571.2 396 75.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.0e-160 568.9 421 72.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 6.6e-160 567.8 369 78.0
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 6.6e-160 567.8 377 76.9
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 8.6e-160 567.4 371 78.2
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.5e-159 565.8 369 77.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 9.6e-159 563.9 376 76.1
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.1e-158 562.8 380 77.1
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 8.1e-158 560.8 402 73.1
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 9.0e-157 557.4 396 73.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 5.8e-156 554.7 374 74.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.4e-155 551.2 398 73.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.2e-154 548.5 377 73.7
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.2e-153 547.0 367 75.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.1e-153 546.2 422 69.4
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 7.8e-153 544.3 378 73.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.3e-152 543.5 395 71.4
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.0e-152 542.3 368 74.5
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.9e-152 542.0 388 72.4
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 6.6e-152 541.2 360 75.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.5e-151 540.0 374 71.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.1e-149 533.9 373 72.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.4e-149 532.7 398 69.3
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.9e-147 525.8 373 72.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.4e-146 522.7 366 72.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 3.2e-146 522.3 378 70.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.1e-146 521.2 389 69.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.5e-145 518.8 287 87.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 6.0e-145 518.1 386 68.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.9e-145 517.7 392 68.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.0e-144 515.8 384 69.0
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 3.0e-144 515.8 370 72.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.0e-144 515.8 364 71.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 8.7e-144 514.2 409 66.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.1e-143 513.8 355 74.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.1e-143 513.8 358 74.0
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.1e-143 513.8 364 71.2
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 2.5e-143 512.7 368 70.4
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.3e-143 512.3 402 66.4
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 3.3e-143 512.3 355 71.5
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 4.3e-143 511.9 369 72.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 7.4e-143 511.1 287 86.1
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.6e-143 510.8 358 73.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.6e-143 510.8 358 73.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.3e-142 510.4 355 73.2
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.8e-141 506.5 358 70.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.9e-141 504.6 361 71.2
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.9e-141 504.6 355 72.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.4e-140 502.3 357 72.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.2e-139 499.6 366 68.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.2e-139 499.6 362 69.9
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.9e-139 499.2 373 69.4
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 8.4e-139 497.7 314 78.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.1e-138 497.3 402 64.9
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.1e-138 497.3 287 83.6
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.1e-138 497.3 359 71.6
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.9e-138 496.5 366 70.5
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.5e-138 495.0 418 62.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.6e-137 491.9 391 64.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.3e-136 489.6 373 68.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.3e-136 489.6 373 67.8
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 3.9e-136 488.8 396 64.9
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 8.7e-136 487.6 367 68.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 4.3e-135 485.3 369 65.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.3e-134 483.8 339 72.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.0e-133 478.8 367 66.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-131 474.2 382 64.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.0e-131 474.2 326 72.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.9e-131 471.9 382 64.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.4e-130 470.3 381 63.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.2e-130 468.8 377 65.3
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 5.5e-130 468.4 377 64.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 3.5e-129 465.7 360 64.7
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 7.9e-129 464.5 361 65.1
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.9e-129 464.5 360 65.0
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.3e-128 463.0 355 66.5
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.0e-128 462.6 382 62.3
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.0e-128 462.6 366 66.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.5e-127 459.5 369 65.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.3e-127 459.1 388 62.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 9.7e-127 457.6 386 63.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.6e-126 456.8 371 64.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.2e-126 456.4 381 62.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.8e-126 456.1 374 62.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 3.4e-124 449.1 374 63.1
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.4e-124 449.1 287 78.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 4.5e-124 448.7 382 63.1
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.6e-124 448.0 377 62.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.0e-123 447.6 379 62.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-123 447.6 378 63.5
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 5.0e-123 445.3 378 62.7
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 5.0e-123 445.3 340 68.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.9e-122 443.4 378 63.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.2e-122 442.6 508 49.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.6e-121 439.1 376 61.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.9e-120 435.6 358 64.2
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 5.1e-120 435.3 366 61.5
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 8.7e-120 434.5 357 63.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 9.7e-119 431.0 382 61.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 3.7e-118 429.1 359 63.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-117 426.0 376 62.8
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.3e-117 425.2 360 62.2
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.9e-117 424.9 352 62.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.0e-116 423.3 378 56.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.7e-113 412.9 361 61.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-112 411.0 358 62.0
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-112 410.6 360 61.7
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 5.1e-112 408.7 358 61.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.1e-111 407.5 287 73.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-111 407.1 359 61.3
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.5e-111 407.1 359 61.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-111 406.8 371 60.1
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.0e-111 406.8 290 64.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 3.3e-111 406.0 362 60.8
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.3e-111 406.0 368 59.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 3.3e-111 406.0 362 60.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-110 402.1 352 60.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 4.8e-110 402.1 358 58.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 6.3e-110 401.7 362 60.2
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 6.9e-109 398.3 292 70.5
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.2e-108 397.5 357 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.2e-97 360.9 333 56.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.8e-96 357.1 404 49.5
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.0e-92 343.6 251 68.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.5e-82 310.1 184 82.1
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.9e-62 243.4 299 43.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 7.8e-60 235.3 293 44.7
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 9.9e-55 218.4 171 64.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 6.4e-54 215.7 258 48.8
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-52 210.3 160 65.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 7.6e-47 192.2 248 49.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 3.4e-31 140.2 189 42.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 8.7e-27 125.6 72 79.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.5e-26 124.0 173 45.7
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.6e-23 114.0 101 59.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 4.9e-22 109.8 131 50.4
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.3e-17 95.1 282 26.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.6e-17 94.7 111 49.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.4e-15 87.0 56 75.0


User provided reference genes

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