Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.8e-112 407.9 214 100.0
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 7.2e-92 340.9 217 83.9
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.8e-87 326.2 211 82.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.3e-82 309.3 215 77.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-72 276.9 214 72.9
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-71 273.9 214 72.0
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.0e-70 269.6 214 71.0
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.7e-67 259.2 215 68.4
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.0e-66 255.4 223 66.4
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-65 253.4 215 67.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.0e-61 240.7 222 61.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.5e-60 236.9 214 65.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.7e-59 231.9 210 64.8
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.0e-58 230.7 210 64.8
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 6.8e-58 228.0 211 61.6
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 4.4e-57 225.3 210 60.5
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.3e-56 223.8 211 63.0
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.3e-56 221.1 212 62.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 8.3e-56 221.1 209 62.2
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.8e-55 219.9 211 62.6
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.4e-55 219.5 213 61.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.2e-54 217.2 215 59.5
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.6e-54 216.9 210 60.0
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.0e-54 216.5 211 61.1
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.9e-53 212.6 209 57.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.5e-52 210.3 214 62.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.2e-52 209.1 216 59.7
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.2e-52 209.1 216 59.7
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.6e-51 206.8 202 60.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 6.8e-50 201.4 195 59.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.7e-48 195.7 216 58.8
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 3.1e-47 192.6 212 56.1
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 4.1e-47 192.2 190 58.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.5e-46 189.1 215 54.9
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.3e-45 187.2 220 53.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 5.0e-45 185.3 224 52.7
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.1e-44 184.1 216 53.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.5e-44 183.7 211 54.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.3e-44 182.6 210 57.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.6e-44 181.8 216 52.8
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 9.5e-44 181.0 224 52.7
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.6e-43 180.3 202 54.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.0e-42 177.6 210 54.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.0e-41 173.3 217 52.5
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 9.8e-41 171.0 224 52.2
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.2e-40 169.9 215 53.5
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.4e-40 168.3 220 50.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 6.4e-40 168.3 218 50.5
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.8e-39 166.8 214 50.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.4e-39 166.4 214 52.8
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.4e-39 166.4 219 52.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 4.1e-39 165.6 215 52.6
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.7e-38 162.9 214 53.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.7e-38 162.9 197 56.3
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.9e-38 161.8 196 52.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 7.8e-38 161.4 216 50.0
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.3e-37 160.6 215 49.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.3e-37 160.6 191 55.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.7e-37 160.2 196 53.1
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 8.6e-37 157.9 224 49.6
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-36 157.5 215 50.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.9e-36 156.8 181 54.1
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 2.5e-36 156.4 193 54.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.5e-36 156.4 215 45.6
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.3e-36 156.0 216 50.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.6e-35 153.7 195 51.3
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.8e-35 152.9 210 49.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.6e-35 152.5 219 48.9
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.7e-35 152.1 215 48.4
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.0e-34 151.0 218 48.6
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.3e-34 149.8 227 49.3
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.1e-34 149.4 190 53.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 5.2e-34 148.7 147 59.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 8.9e-34 147.9 200 48.0
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.5e-33 147.1 203 53.7
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 2.6e-33 146.4 185 52.4
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.4e-33 146.0 213 47.4
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.8e-33 145.2 171 52.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.9e-32 142.9 210 49.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 7.0e-31 138.3 215 51.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.6e-30 137.1 178 49.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.5e-30 136.0 195 49.7
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.6e-30 135.6 217 47.9
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.3e-29 134.0 212 49.5
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 8.6e-29 131.3 199 47.2
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 8.6e-29 131.3 218 48.6
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 8.6e-29 131.3 216 45.4
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 5.6e-28 128.6 210 44.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.3e-28 128.3 177 51.4
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 7.3e-28 128.3 218 44.5
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.2e-27 127.5 197 47.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.6e-27 127.1 219 42.9
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-27 126.7 178 47.8
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.8e-27 126.3 217 44.7
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.1e-26 124.4 179 47.5
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.8e-26 123.6 199 46.2
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 3.1e-26 122.9 210 42.4
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.2e-25 120.9 218 43.6
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.5e-25 120.6 147 49.7
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.6e-25 119.8 186 43.5
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.4e-25 119.0 192 44.3
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.7e-24 117.1 163 46.6
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 8.3e-24 114.8 209 42.1
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.3e-24 114.8 196 46.9
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.4e-23 114.0 197 43.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.9e-23 113.6 193 43.0
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.4e-23 113.2 217 41.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.4e-23 113.2 201 43.8
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 4.1e-23 112.5 195 45.6
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 7.1e-23 111.7 184 44.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 9.2e-23 111.3 195 42.6
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.2e-22 110.9 190 43.2
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.7e-22 109.8 175 46.9
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 7.8e-22 108.2 195 41.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.7e-21 107.1 217 40.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 5.1e-21 105.5 195 42.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 5.1e-21 105.5 199 41.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 5.1e-21 105.5 199 41.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.6e-21 105.1 195 41.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-20 104.4 205 40.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.3e-20 102.8 198 41.4
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.6e-19 100.5 196 43.9
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.6e-19 99.4 187 39.0
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-18 97.4 203 42.4
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.4e-18 97.4 195 42.1
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.3e-18 96.7 196 40.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.3e-18 96.7 185 42.7
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 5.2e-18 95.5 186 39.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-17 94.4 187 40.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-17 94.4 187 40.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 3.4e-17 92.8 187 40.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 3.4e-17 92.8 210 41.4
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.4e-17 92.8 72 68.1
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.4e-17 92.4 165 42.4
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.4e-17 92.4 192 40.1
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-16 90.9 121 50.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-16 90.5 186 39.8
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 6.4e-16 88.6 196 41.3
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 1.4e-15 87.4 68 67.6
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.4e-15 87.4 170 38.2
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.4e-15 86.7 211 38.9
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.1e-15 85.9 142 45.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 4.1e-15 85.9 187 39.0
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 4.1e-15 85.9 180 40.0
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-14 83.6 64 65.6
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 2.7e-14 83.2 135 43.0
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.0e-13 79.7 176 38.1
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 5.1e-13 79.0 180 39.4
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.1e-12 77.8 214 37.9
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.5e-12 76.6 202 36.6
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.3e-12 75.9 195 32.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 7.3e-12 75.1 183 38.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.6e-11 73.9 86 47.7
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 6.2e-11 72.0 176 38.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 6.9e-10 68.6 245 33.1
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.2e-09 67.8 187 34.8
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 9.9e-09 64.7 133 42.1
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.4e-07 60.1 209 32.1
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 2.1e-06 57.0 65 49.2
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 2.7e-06 56.6 164 34.1
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.5e-06 56.2 243 30.5
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 3.5e-06 56.2 86 45.3


User provided reference genes

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