Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 1.9e-128 462.6 253 100.0
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 2.7e-114 415.6 252 80.2
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.4e-101 372.1 251 73.3
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.4e-101 372.1 251 73.3
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 2.2e-100 369.4 251 72.9
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.3e-92 343.6 252 69.0
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 2.1e-90 336.3 252 67.9
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 3.9e-89 332.0 252 67.9
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 1.1e-88 330.5 244 65.6
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 1.9e-88 329.7 224 69.6
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 2.5e-88 329.3 225 69.3
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 9.1e-86 320.9 252 62.7
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 1.2e-85 320.5 218 69.3
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 1.2e-85 320.5 253 69.2
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 5.9e-85 318.2 252 63.5
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.3e-84 317.0 252 62.7
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 8.5e-84 314.3 244 70.5
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 8.5e-84 314.3 249 61.0
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.4e-83 313.5 218 68.8
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 4.2e-83 312.0 220 65.9
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 7.2e-83 311.2 245 62.9
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 2.1e-82 309.7 248 60.9
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 4.6e-82 308.5 250 64.8
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 4.6e-82 308.5 250 64.8
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 7.9e-82 307.8 252 63.5
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.8e-81 306.6 253 60.9
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 1.8e-81 306.6 248 61.7
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.8e-81 306.6 257 61.1
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 5.1e-81 305.1 247 64.8
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.1e-81 305.1 228 64.9
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.1e-81 305.1 228 64.9
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 8.8e-81 304.3 249 63.9
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 2.0e-80 303.1 223 64.1
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 1.3e-79 300.4 253 60.1
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 1.3e-79 300.4 248 62.5
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.7e-79 300.1 245 60.8
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 6.3e-79 298.1 210 66.2
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 8.2e-79 297.7 256 58.2
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 1.1e-78 297.4 220 63.6
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 1.1e-78 297.4 242 59.1
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 1.4e-78 297.0 255 60.0
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.4e-78 297.0 221 65.6
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 2.4e-78 296.2 255 59.2
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 3.1e-78 295.8 256 57.8
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 3.1e-78 295.8 229 60.7
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 3.1e-78 295.8 257 59.5
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 3.1e-78 295.8 245 59.6
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 5.3e-78 295.0 261 61.7
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 5.3e-78 295.0 221 64.7
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.3e-78 295.0 221 64.7
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.3e-78 295.0 221 64.7
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 5.3e-78 295.0 252 56.3
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.2e-77 293.9 260 58.5
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 2.6e-77 292.7 250 61.2
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.9e-77 291.6 221 64.7
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 5.9e-77 291.6 254 56.3
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 4.2e-75 285.4 244 59.4
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 7.2e-75 284.6 231 60.2
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 7.2e-75 284.6 249 58.6
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 9.4e-75 284.3 225 60.9
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 1.2e-74 283.9 224 62.5
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 2.7e-74 282.7 256 55.1
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 2.7e-74 282.7 243 58.0
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 3.0e-73 279.3 220 68.2
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 3.9e-73 278.9 266 57.1
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 5.2e-73 278.5 253 54.9
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 5.2e-73 278.5 247 60.3
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.1e-72 277.3 253 55.3
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 2.6e-72 276.2 254 55.9
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 2.6e-72 276.2 220 61.8
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 2.6e-72 276.2 244 57.4
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 1.7e-71 273.5 251 62.5
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.7e-71 273.5 244 55.7
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 1.7e-71 273.5 253 53.8
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 6.3e-71 271.6 256 54.3
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 8.2e-71 271.2 215 61.9
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.8e-70 270.0 249 57.0
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 1.8e-70 270.0 244 54.9
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 4.1e-70 268.9 261 51.0
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 7.0e-70 268.1 251 61.8
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 1.2e-69 267.3 247 55.1
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 2.0e-69 266.5 212 61.3
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 2.0e-69 266.5 247 54.7
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 2.0e-69 266.5 247 54.7
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.6e-69 266.2 221 58.8
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 2.6e-69 266.2 231 55.4
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 5.9e-69 265.0 293 48.8
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 1.3e-68 263.8 219 59.4
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 2.2e-68 263.1 219 59.8
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 2.2e-68 263.1 261 55.9
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 2.9e-68 262.7 219 59.4
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 8.5e-68 261.2 261 50.2
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 1.5e-67 260.4 209 66.5
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 1.9e-67 260.0 180 68.3
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 1.9e-67 260.0 216 57.4
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 2.5e-67 259.6 219 59.8
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 5.5e-67 258.5 256 53.5
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 5.5e-67 258.5 245 53.9
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 5.5e-67 258.5 246 52.8
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 7.2e-67 258.1 221 56.6
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 1.2e-66 257.3 216 56.9
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 1.6e-66 256.9 220 58.6
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 4.0e-65 252.3 219 57.5
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 6.7e-65 251.5 243 53.1
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 4.4e-64 248.8 229 52.8
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 9.7e-64 247.7 242 50.4
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 2.2e-63 246.5 222 54.5
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 6.3e-63 245.0 220 57.7
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 1.1e-62 244.2 204 57.8
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 9.1e-62 241.1 231 55.0
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 2.2e-60 236.5 181 57.5
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.1e-59 234.2 219 53.0
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 2.5e-59 233.0 240 52.1
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 1.6e-58 230.3 201 57.2
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 3.0e-57 226.1 221 50.2
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.2e-53 214.2 208 50.5
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 5.9e-53 211.8 215 51.6
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 7.3e-43 178.3 145 55.2
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 1.6e-42 177.2 147 61.9
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 8.0e-42 174.9 148 58.1
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 9.8e-40 167.9 150 56.7
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 1.4e-38 164.1 135 53.3
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 4.1e-38 162.5 167 50.9
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 2.3e-28 130.2 252 37.3
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 7.3e-27 125.2 146 44.5
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 7.3e-27 125.2 156 39.1
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 2.1e-26 123.6 155 39.4
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 5.1e-20 102.4 154 39.0
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 1.5e-16 90.9 99 57.6
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 9.9e-16 88.2 79 51.9
Sp2g25370 Schrenkiella parvula HOM05D005683 ORTHO05D006958 1.2e-08 64.7 82 48.8
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 1.5e-08 64.3 173 27.7
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 2.0e-08 63.9 145 28.3
Lsat_1_v5_gn_2_125901 Lactuca sativa HOM05D002715 ORTHO05D002996 4.9e-07 59.3 154 26.6


User provided reference genes

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