Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 8.7e-39 163.3 91 100.0
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 5.1e-31 137.5 91 80.2
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 9.3e-25 116.7 92 76.1
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 7.9e-24 113.6 92 65.2
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.8e-23 112.5 92 75.0
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.3e-21 106.3 91 63.7
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.3e-21 106.3 97 71.1
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 1.3e-21 106.3 92 62.0
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 2.2e-21 105.5 91 69.2
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 1.1e-20 103.2 83 62.7
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 1.8e-20 102.4 92 59.8
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 4.1e-20 101.3 92 58.7
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 6.9e-20 100.5 92 57.6
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 2.0e-19 99.0 93 55.9
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 4.5e-19 97.8 91 60.4
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.9e-19 97.4 91 60.4
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.9e-19 97.4 91 60.4
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 7.6e-19 97.1 91 53.8
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 7.6e-19 97.1 91 53.8
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 7.6e-19 97.1 91 53.8
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.7e-18 95.9 91 58.2
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 5.0e-18 94.4 91 57.1
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 6.5e-18 94.0 87 69.0
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.4e-17 92.8 85 57.6
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.9e-17 92.4 89 65.2
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 1.2e-16 89.7 78 61.5
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.8e-15 85.9 84 56.0
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.8e-15 85.9 88 55.7
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 3.0e-15 85.1 96 56.2
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 8.8e-15 83.6 87 56.3
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 1.1e-14 83.2 80 60.0
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 1.9e-14 82.4 77 66.2
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.9e-14 82.4 88 51.1
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 2.5e-14 82.0 95 55.8
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 5.7e-14 80.9 92 54.3
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.7e-13 79.3 96 52.1
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 3.7e-13 78.2 95 47.4
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 4.8e-13 77.8 96 58.3
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 8.2e-13 77.0 95 47.4
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 1.1e-12 76.6 74 56.8
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.8e-12 75.9 96 57.3
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.8e-12 75.9 79 54.4
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 5.3e-12 74.3 91 45.1
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 6.9e-12 73.9 96 45.8
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 6.9e-12 73.9 91 46.2
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 9.1e-12 73.6 71 60.6
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 9.1e-12 73.6 71 60.6
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.2e-11 73.2 95 46.3
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.0e-11 72.4 90 52.2
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 4.5e-11 71.2 93 46.2
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 4.5e-11 71.2 78 55.1
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.0e-10 70.1 72 56.9
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 1.3e-10 69.7 98 42.9
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.9e-10 68.6 90 50.0
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 3.8e-10 68.2 76 55.3
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 3.8e-10 68.2 72 63.9
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 6.5e-10 67.4 77 58.4
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 6.5e-10 67.4 74 44.6
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 2.5e-09 65.5 93 45.2
Gohir.D06G211966 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.2e-09 64.7 73 64.4
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.2e-08 63.2 94 42.6
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 2.1e-08 62.4 79 46.8
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 2.1e-08 62.4 92 41.3
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.6e-08 61.6 95 44.2
FAN25G1236 Fragaria x ananassa HOM05D007380 ORTHO05D009269 4.7e-08 61.2 87 56.3
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 4.7e-08 61.2 92 40.2
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 4.7e-08 61.2 92 40.2
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 6.1e-08 60.8 87 47.1
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 6.1e-08 60.8 91 39.6
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 7.9e-08 60.5 104 38.5
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.0e-07 60.1 86 41.9
Cfa014532 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.4e-07 59.7 86 41.9
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.4e-07 59.7 86 41.9
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.4e-07 59.7 86 41.9
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.8e-07 59.3 79 39.2
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 2.3e-07 58.9 74 40.5
Prupe.3G229800 Prunus persica HOM05D000831 ORTHO05D000660 3.9e-07 58.2 92 39.1
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 3.9e-07 58.2 71 49.3
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 8.8e-07 57.0 75 48.0
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.1e-06 56.6 79 40.5
Cpa.g.sc27.133 Carica papaya HOM05D007836 ORTHO05D009876 1.1e-06 56.6 64 64.1
Prupe.3G229700 Prunus persica HOM05D000831 ORTHO05D000660 1.1e-06 56.6 75 45.3
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 1.5e-06 56.2 76 44.7
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 1.5e-06 56.2 85 42.4
BcaB01g00888 Brassica carinata HOM05D000831 ORTHO05D000660 2.0e-06 55.8 75 38.7
Carub.0001s3156 Capsella rubella HOM05D000831 ORTHO05D000660 2.0e-06 55.8 79 41.8
CsaV3_6G049650 Cucumis sativus L. HOM05D007836 ORTHO05D009876 2.0e-06 55.8 88 40.9
BcaB01g00890 Brassica carinata HOM05D000831 ORTHO05D000660 2.6e-06 55.5 75 38.7
BcaC01g01784 Brassica carinata HOM05D000831 ORTHO05D000660 2.6e-06 55.5 75 41.3
C03p71900 Brassica napus HOM05D000831 ORTHO05D000660 2.6e-06 55.5 75 41.3
CARHR252480 Cardamine hirsuta HOM05D010797 ORTHO05D012946 2.6e-06 55.5 36 69.4
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 2.6e-06 55.5 75 44.0
PGR142G2454 Punica granatum HOM05D000831 ORTHO05D000660 2.6e-06 55.5 43 60.5
CARHR256440 Cardamine hirsuta HOM05D000831 ORTHO05D000660 3.3e-06 55.1 79 40.5
Lj3g0027486 Lotus japonicus HOM05D000831 ORTHO05D000660 3.3e-06 55.1 79 39.2
Sp6g07170 Schrenkiella parvula HOM05D000831 ORTHO05D000660 3.3e-06 55.1 75 38.7
THA.LOC104812666 Tarenaya hassleriana HOM05D010797 ORTHO05D012946 3.3e-06 55.1 73 47.9
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 4.4e-06 54.7 75 42.7
AL6G48670 Arabidopsis lyrata HOM05D010797 ORTHO05D012946 5.7e-06 54.3 60 50.0
BcaC08g43861 Brassica carinata HOM05D000831 ORTHO05D000660 5.7e-06 54.3 74 40.5
AUR62029301 Chenopodium quinoa HOM05D000831 ORTHO05D000660 5.7e-06 54.3 42 59.5
AT4G05070 Arabidopsis thaliana HOM05D010797 ORTHO05D012946 7.4e-06 53.9 77 42.9
BcaB07g32973 Brassica carinata HOM05D000831 ORTHO05D000660 7.4e-06 53.9 74 40.5
BcaB07g32979 Brassica carinata HOM05D000831 ORTHO05D000660 7.4e-06 53.9 74 40.5
A06p19930 Brassica napus HOM05D000831 ORTHO05D000660 7.4e-06 53.9 75 40.0
BraA06t25076Z Brassica rapa HOM05D000831 ORTHO05D000660 7.4e-06 53.9 75 40.0
CiPaw.03G169100 Carya illinoinensis HOM05D000831 ORTHO05D000660 7.4e-06 53.9 85 37.6
CiPaw.03G169200 Carya illinoinensis HOM05D000831 ORTHO05D000660 7.4e-06 53.9 87 36.8
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 7.4e-06 53.9 75 42.7
BcaC04g21368 Brassica carinata HOM05D010797 ORTHO05D012946 9.7e-06 53.5 55 49.1
C09p32630 Brassica napus HOM05D010797 ORTHO05D012946 9.7e-06 53.5 55 49.1
BolC9t56109H Brassica oleracea HOM05D010797 ORTHO05D012946 9.7e-06 53.5 55 49.1
BraA09t38831Z Brassica rapa HOM05D000831 ORTHO05D000660 9.7e-06 53.5 74 40.5
CiPaw.03G168900 Carya illinoinensis HOM05D000831 ORTHO05D000660 9.7e-06 53.5 85 37.6
CiPaw.03G169000 Carya illinoinensis HOM05D000831 ORTHO05D000660 9.7e-06 53.5 85 37.6
Glyma.13G301700 Glycine max HOM05D000831 ORTHO05D000660 9.7e-06 53.5 80 40.0
Medtr2g089930 Medicago truncatula HOM05D000831 ORTHO05D000660 9.7e-06 53.5 79 41.8
Medtr2g089945 Medicago truncatula HOM05D000831 ORTHO05D000660 9.7e-06 53.5 79 41.8
Medtr4g045990 Medicago truncatula HOM05D000831 ORTHO05D000660 9.7e-06 53.5 79 38.0
TAR627G0747 Trochodendron aralioides HOM05D000831 ORTHO05D000660 9.7e-06 53.5 80 41.2


User provided reference genes

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