Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 8.4e-129 463.8 245 100.0
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 1.6e-95 353.2 249 80.3
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 1.8e-91 339.7 226 82.7
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.1e-67 260.8 254 63.4
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.4e-67 259.6 254 63.0
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 5.3e-67 258.5 254 63.0
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 5.5e-56 221.9 250 60.0
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.2e-55 220.7 250 59.6
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 1.6e-47 193.7 256 52.7
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 2.3e-46 189.9 277 48.4
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.7e-44 182.6 251 56.2
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 3.7e-44 182.6 251 56.2
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 1.7e-41 173.7 265 46.8
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 3.0e-41 172.9 233 51.5
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 1.1e-40 171.0 254 50.4
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 1.1e-40 171.0 254 50.4
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 1.9e-40 170.2 259 49.4
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 7.3e-40 168.3 292 44.2
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.2e-39 167.5 278 47.8
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 6.2e-39 165.2 230 50.0
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 6.2e-39 165.2 265 44.9
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 1.4e-38 164.1 272 45.6
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.4e-38 164.1 230 49.6
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 1.4e-38 164.1 252 49.2
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 2.3e-38 163.3 246 48.0
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 5.2e-38 162.2 249 46.2
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 5.2e-38 162.2 235 47.7
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 6.8e-38 161.8 261 45.6
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 8.9e-38 161.4 277 45.8
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 1.2e-37 161.0 250 45.6
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 1.2e-37 161.0 251 49.4
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 7.5e-37 158.3 277 43.7
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 1.3e-36 157.5 241 49.0
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 1.7e-36 157.1 230 49.6
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 2.2e-36 156.8 284 44.0
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 2.9e-36 156.4 270 43.3
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 3.7e-36 156.0 186 53.2
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 3.7e-36 156.0 262 45.4
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 4.9e-36 155.6 240 46.7
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 6.4e-36 155.2 252 47.2
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 1.4e-35 154.1 262 43.9
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 1.9e-35 153.7 245 45.7
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 2.4e-35 153.3 270 45.2
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 2.4e-35 153.3 275 45.1
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 5.4e-35 152.1 220 46.4
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 2.7e-34 149.8 253 43.9
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 3.5e-34 149.4 247 45.3
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.7e-33 147.1 229 46.7
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 3.0e-33 146.4 290 39.3
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 1.1e-32 144.4 265 43.0
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 1.5e-32 144.1 284 40.5
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 2.5e-32 143.3 244 47.5
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 7.3e-32 141.7 242 47.1
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 4.7e-31 139.0 222 45.9
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 8.1e-31 138.3 253 41.5
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 1.1e-30 137.9 229 44.1
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 1.1e-30 137.9 228 46.1
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 1.8e-30 137.1 176 47.7
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 3.1e-30 136.3 222 45.5
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 5.2e-30 135.6 244 43.9
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 8.9e-30 134.8 248 45.6
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 1.5e-29 134.0 252 41.3
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.5e-29 134.0 252 41.3
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.5e-29 134.0 253 41.5
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 1.5e-29 134.0 262 44.7
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 3.4e-29 132.9 236 43.6
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 4.4e-29 132.5 231 43.7
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 1.3e-28 131.0 213 44.6
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 1.7e-28 130.6 237 43.0
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 3.7e-28 129.4 233 42.9
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 3.7e-28 129.4 132 53.8
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 3.7e-28 129.4 259 39.4
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 8.3e-28 128.3 167 49.1
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 1.9e-27 127.1 218 43.1
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 1.9e-27 127.1 224 43.8
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 1.9e-27 127.1 281 39.9
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 3.2e-27 126.3 233 42.5
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 1.6e-26 124.0 226 43.4
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 2.1e-26 123.6 228 45.2
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 2.7e-26 123.2 235 41.3
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 7.8e-26 121.7 237 42.2
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 7.8e-26 121.7 260 39.2
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 3.9e-25 119.4 252 41.3
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 5.1e-25 119.0 232 43.1
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 6.6e-25 118.6 260 38.5
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 1.1e-24 117.9 246 40.2
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 1.1e-24 117.9 289 37.0
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 1.5e-24 117.5 283 37.1
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 1.5e-24 117.5 230 40.0
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 1.6e-23 114.0 211 45.0
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 6.2e-23 112.1 255 38.4
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 1.4e-22 110.9 243 39.1
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 1.8e-22 110.5 220 40.5
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 2.4e-22 110.2 236 39.8
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 8.9e-22 108.2 262 34.7
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 3.4e-21 106.3 249 37.3
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 7.6e-21 105.1 244 41.0
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 3.8e-20 102.8 224 39.7
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 8.4e-20 101.7 187 42.2
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 2.4e-19 100.1 262 34.0
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 4.1e-19 99.4 203 41.4
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 9.2e-19 98.2 180 42.2
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 2.7e-18 96.7 124 50.0
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 2.7e-18 96.7 288 33.7
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 2.7e-18 96.7 128 46.9
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 2.3e-17 93.6 126 46.8
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 8.7e-17 91.7 190 39.5
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 1.1e-16 91.3 250 38.8
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.5e-16 90.9 252 35.7
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 4.3e-16 89.4 336 29.5
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 4.3e-16 89.4 256 36.3
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 2.1e-15 87.0 122 43.4
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 1.5e-13 80.9 74 56.8
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 5.4e-11 72.4 311 29.6
Sc24g0000710 Simmondsia chinensis HOM05D006486 ORTHO05D007888 5.4e-11 72.4 107 47.7
ATR0693G170 Amborella trichopoda HOM05D006486 ORTHO05D007888 5.1e-09 65.9 138 39.1
Ah.14g088910 Amaranthus hybridus HOM05D000873 ORTHO05D001654 1.3e-07 61.2 144 34.0
Ah.09g236140 Amaranthus hybridus HOM05D006486 ORTHO05D007888 3.6e-07 59.7 112 40.2
AT4G05018 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 1.1e-06 58.2 205 33.7
HPP92_012357 Vanilla planifolia HOM05D006486 ORTHO05D007888 1.4e-06 57.8 227 34.4


User provided reference genes

Program Settings