Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 0.0e+00 1341.3 803 100.0
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 3.0e-143 513.5 552 52.2
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 7.4e-142 508.8 514 54.5
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 2.8e-141 506.9 556 52.0
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 4.1e-140 503.1 466 56.4
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 6.5e-138 495.7 495 55.6
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 6.5e-138 495.7 477 54.7
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 3.2e-137 493.4 567 49.0
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 3.6e-136 490.0 471 55.0
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 6.1e-136 489.2 463 54.6
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 6.7e-135 485.7 484 55.4
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 1.2e-134 485.0 503 52.9
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 3.3e-134 483.4 499 52.3
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 7.5e-134 482.3 440 58.0
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 4.1e-132 476.5 531 51.4
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 3.5e-131 473.4 398 60.1
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 2.9e-130 470.3 476 53.2
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 2.5e-129 467.2 419 56.8
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 7.2e-129 465.7 400 59.0
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 3.6e-128 463.4 564 48.6
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 2.0e-126 457.6 468 53.8
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 7.5e-126 455.7 492 51.2
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 9.8e-126 455.3 467 51.8
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 1.7e-125 454.5 448 53.6
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 1.7e-125 454.5 400 59.0
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 2.4e-124 450.7 499 50.3
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 3.1e-124 450.3 455 51.9
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 1.2e-123 448.4 437 53.8
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 1.6e-123 448.0 450 52.7
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.6e-123 448.0 455 51.9
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 2.7e-123 447.2 515 49.7
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 3.5e-123 446.8 467 51.2
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 5.9e-123 446.0 487 49.9
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 1.0e-122 445.3 400 55.2
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 1.0e-122 445.3 463 51.4
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.3e-122 444.9 482 49.4
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 2.9e-122 443.7 433 54.5
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.9e-122 443.7 508 49.6
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.5e-121 441.4 398 56.5
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 3.2e-121 440.3 498 47.8
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 9.5e-121 438.7 412 52.9
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 2.8e-120 437.2 419 53.0
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 4.7e-120 436.4 524 47.5
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 1.2e-118 431.8 487 48.9
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 2.0e-118 431.0 502 46.8
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 3.4e-118 430.3 477 49.9
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 9.8e-118 428.7 448 51.1
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.8e-117 427.2 486 49.8
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 1.1e-116 425.2 502 46.8
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 9.2e-116 422.2 535 45.8
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 1.2e-115 421.8 481 48.9
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 1.6e-115 421.4 425 53.9
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 1.0e-114 418.7 457 48.4
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 5.0e-114 416.4 437 50.8
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 6.6e-114 416.0 483 48.7
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 9.5e-113 412.1 418 51.9
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 6.1e-112 409.5 455 48.6
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.3e-109 401.7 541 43.6
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 1.7e-109 401.4 426 48.8
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 7.0e-108 396.0 432 51.6
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 6.0e-107 392.9 416 49.5
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 2.5e-105 387.5 483 46.0
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 3.3e-105 387.1 399 49.9
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 7.3e-105 386.0 496 45.4
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 7.3e-105 386.0 509 44.4
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 4.7e-104 383.3 400 51.0
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 3.1e-103 380.6 441 45.4
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 2.1e-96 357.8 380 50.5
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 2.1e-88 331.3 344 48.8
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 1.4e-79 302.0 407 40.0
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 3.6e-72 277.3 290 50.3
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 2.4e-71 274.6 334 46.7
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 1.3e-64 252.3 331 44.1
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 6.0e-59 233.4 259 47.9
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 2.8e-56 224.6 285 44.2
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 1.2e-43 182.6 173 53.2
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 5.7e-41 173.7 303 39.6
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.1e-39 167.9 282 40.1
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 1.4e-34 152.5 274 35.4
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 5.7e-33 147.1 195 43.1
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 1.3e-32 146.0 120 53.3
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 3.2e-28 131.3 132 53.8
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 4.5e-22 110.9 139 44.6
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 1.0e-21 109.8 170 40.0
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 5.7e-17 94.0 96 47.9
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 2.7e-11 75.1 80 45.0
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 6.8e-10 70.5 144 31.2
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 1.7e-08 65.9 91 40.7
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.7e-08 64.7 174 31.6
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 1.4e-07 62.8 45 68.9


User provided reference genes

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