Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.2e-94 349.7 167 100.0
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 3.4e-57 225.3 109 96.3
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.5e-49 199.9 107 86.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.5e-49 199.9 107 86.9
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.0e-49 199.5 107 85.0
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.5e-49 198.4 107 86.0
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 6.7e-45 184.5 99 85.9
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.5e-44 182.6 101 79.2
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.1e-42 177.2 100 80.0
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 9.0e-42 174.1 99 80.8
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.4e-41 172.2 100 81.0
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.0e-40 170.6 99 78.8
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.9e-40 169.1 99 79.8
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 5.0e-40 168.3 98 78.6
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.1e-39 167.2 98 77.6
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.1e-39 167.2 99 76.8
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.1e-39 167.2 120 67.5
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.1e-39 167.2 99 76.8
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 4.2e-39 165.2 101 74.3
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 7.2e-39 164.5 107 71.0
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 9.3e-39 164.1 99 76.8
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.2e-38 163.7 100 73.0
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 2.7e-38 162.5 99 75.8
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.7e-38 162.5 102 76.5
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.7e-38 162.5 102 76.5
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 4.6e-38 161.8 102 70.6
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.6e-38 161.8 100 72.0
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 4.6e-38 161.8 102 70.6
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 6.1e-38 161.4 104 72.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 6.1e-38 161.4 99 74.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 7.9e-38 161.0 99 75.8
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 7.9e-38 161.0 99 73.7
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.4e-37 160.2 144 57.6
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.4e-37 160.2 99 74.7
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.3e-37 159.5 98 72.4
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 2.3e-37 159.5 101 70.3
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.3e-37 159.5 101 71.3
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 3.9e-37 158.7 103 70.9
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 3.9e-37 158.7 100 70.0
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 6.7e-37 157.9 100 72.0
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.7e-37 157.9 101 70.3
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.7e-37 157.9 99 73.7
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 6.7e-37 157.9 99 70.7
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 8.8e-37 157.5 101 68.3
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.1e-36 157.1 101 75.2
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.1e-36 157.1 99 71.7
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.1e-36 157.1 101 71.3
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.5e-36 156.8 98 72.4
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.5e-36 156.8 101 68.3
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.5e-36 156.8 101 68.3
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.5e-36 156.8 101 68.3
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.9e-36 156.4 99 70.7
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 2.5e-36 156.0 101 67.3
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.5e-36 156.0 101 68.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.5e-36 156.0 102 67.6
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 2.5e-36 156.0 101 74.3
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.5e-36 156.0 99 71.7
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.5e-36 156.0 101 68.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 3.3e-36 155.6 101 74.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.3e-36 155.6 99 71.7
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 4.3e-36 155.2 101 68.3
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 4.3e-36 155.2 100 70.0
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.7e-36 154.8 102 67.6
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.4e-36 154.5 100 70.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.7e-36 154.1 99 70.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.3e-35 153.7 102 66.7
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-35 153.7 102 72.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.3e-35 153.7 101 69.3
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 1.3e-35 153.7 103 69.9
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.3e-35 153.7 100 69.0
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.7e-35 153.3 101 69.3
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.7e-35 153.3 100 69.0
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.7e-35 153.3 100 69.0
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.2e-35 152.9 101 73.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.2e-35 152.9 99 70.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.2e-35 152.9 98 72.4
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.4e-34 150.2 100 69.0
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.4e-34 150.2 107 68.2
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.4e-34 149.4 87 79.3
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 4.1e-34 148.7 100 66.0
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 4.1e-34 148.7 107 68.2
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 4.1e-34 148.7 98 70.4
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 9.1e-34 147.5 99 68.7
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 9.1e-34 147.5 103 68.9
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.2e-33 147.1 99 65.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 3.4e-33 145.6 98 68.4
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 5.9e-33 144.8 103 63.1
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.7e-33 144.4 113 65.5
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.9e-31 139.8 102 66.7
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.5e-31 139.4 123 56.1
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 2.1e-30 136.3 86 74.4
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.1e-30 136.3 98 62.2
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.9e-30 134.4 131 54.2
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.0e-29 134.0 86 73.3
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 5.1e-29 131.7 107 62.6
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 6.7e-29 131.3 131 51.1
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.5e-28 130.2 110 59.1
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 3.3e-28 129.0 103 61.2
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.7e-22 109.4 70 72.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 2.2e-19 99.8 100 53.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-18 97.1 102 52.9
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.4e-18 96.3 100 51.0
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 9.1e-18 94.4 128 36.7
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.0e-17 93.2 84 52.4
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 5.9e-17 91.7 127 38.6
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.3e-16 90.5 84 51.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.4e-15 84.3 64 67.2
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.4e-15 84.3 64 67.2
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.4e-15 84.3 64 67.2
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 8.0e-14 81.3 121 36.4
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 6.7e-13 78.2 70 55.7
Thecc.06G199200 Theobroma cacao HOM05D007484 ORTHO05D008290 6.5e-08 61.6 35 82.9
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 3.6e-06 55.8 38 65.8


User provided reference genes

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