Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.4e-36 154.8 72 100.0
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 6.0e-35 150.2 72 95.8
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 6.0e-35 150.2 72 95.8
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.0e-34 149.4 72 95.8
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-34 149.1 72 93.1
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-34 149.1 72 93.1
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-34 149.1 72 93.1
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.8e-34 148.7 72 94.4
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.3e-34 148.3 72 90.3
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.3e-34 148.3 72 90.3
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.3e-34 148.3 72 91.7
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.3e-34 148.3 72 90.3
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 3.0e-34 147.9 72 91.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 3.9e-34 147.5 72 90.3
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 3.9e-34 147.5 72 90.3
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 8.7e-34 146.4 72 90.3
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 90.3
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 88.9
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.5e-33 145.6 72 91.7
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.9e-33 145.2 72 86.1
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 88.9
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 90.3
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.3e-33 144.4 72 88.9
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 86.1
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 86.1
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 86.1
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 5.6e-33 143.7 69 92.8
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 87.5
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 88.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 88.9
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 84.7
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 90.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 90.3
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.1e-32 141.7 71 88.7
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 88.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 88.9
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.7e-32 141.0 72 86.1
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 3.7e-32 141.0 71 88.7
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 6.2e-32 140.2 72 84.7
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 83.3
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 80.6
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 81.9
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 87.5
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.4e-31 139.0 70 88.6
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 86.1
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 84.7
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.4e-31 138.3 72 84.7
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 2.4e-31 138.3 70 85.7
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.1e-31 137.9 72 84.7
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 5.3e-31 137.1 71 84.5
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 9.0e-31 136.3 72 84.7
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 9.0e-31 136.3 71 83.1
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 9.0e-31 136.3 71 83.1
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.5e-30 135.6 72 84.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-30 135.6 68 85.3
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-30 135.6 68 85.3
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 2.6e-30 134.8 68 83.8
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 5.8e-30 133.7 71 80.3
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 77.8
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 80.6
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 7.6e-30 133.3 72 80.6
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 7.6e-30 133.3 70 80.0
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 7.6e-30 133.3 71 84.5
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.3e-29 132.5 72 79.2
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 81.9
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.9e-29 130.6 107 60.7
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.5e-29 130.2 107 59.8
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 79.2
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 78.6
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 1.9e-28 128.6 70 78.6
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.2e-28 127.5 70 77.1
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 4.2e-28 127.5 70 78.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 4.2e-28 127.5 68 82.4
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 9.3e-28 126.3 70 75.7
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 7.9e-27 123.2 72 73.6
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.8e-26 122.1 71 70.4
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 3.9e-26 120.9 72 76.4
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 6.7e-26 120.2 71 73.2
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 6.7e-26 120.2 70 71.4
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.1e-25 119.4 72 73.6
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 4.3e-25 117.5 114 53.5
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.3e-24 115.9 59 86.4
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 1.6e-24 115.5 56 94.6
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.8e-24 114.8 63 79.4
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.7e-24 114.4 63 81.0
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.8e-24 114.0 57 86.0
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.8e-24 114.0 56 91.1
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 8.2e-24 113.2 67 73.1
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.1e-23 112.8 56 91.1
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 1.8e-23 112.1 68 70.6
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.4e-23 111.7 56 87.5
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 5.3e-23 110.5 56 82.1
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 6.9e-23 110.2 56 82.1
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 6.9e-23 110.2 56 82.1
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 6.9e-23 110.2 56 82.1
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.0e-23 109.8 56 85.7
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.2e-22 109.4 56 83.9
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.2e-22 109.4 56 82.1
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 1.2e-22 109.4 71 64.8
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 1.2e-22 109.4 61 75.4
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 1.7e-21 105.5 57 78.9
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 80.4
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.7e-21 105.5 56 80.4
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 2.2e-21 105.1 56 83.9
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 5.0e-21 104.0 56 80.4
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 1.1e-20 102.8 52 84.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 80.4
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 5.5e-20 100.5 56 75.0
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 7.1e-20 100.1 56 80.4
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 2.1e-19 98.6 56 78.6
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 2.1e-19 98.6 49 85.7
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 3.5e-19 97.8 56 76.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 7.9e-19 96.7 71 60.6
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.3e-18 95.9 52 76.9
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.8e-18 95.5 55 74.5
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 9.7e-17 89.7 71 57.7
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 2.2e-16 88.6 44 86.4
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.8e-16 88.2 56 75.0
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 3.7e-16 87.8 56 64.3
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 8.2e-16 86.7 69 53.6
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.0e-14 82.0 42 88.1
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 7.7e-14 80.1 72 50.0
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.0e-13 79.7 50 68.0
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.7e-13 79.0 68 52.9
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 4.6e-11 70.9 65 46.2
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 7.9e-11 70.1 71 43.7
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 2.0e-09 65.5 50 62.0
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 4.3e-09 64.3 56 46.4
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 4.1e-07 57.8 30 83.3


User provided reference genes

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