Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 0.0e+00 1433.3 737 100.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 0.0e+00 1149.0 740 81.5
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 7.2e-309 1063.5 751 75.0
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 5.5e-301 1037.3 740 74.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 9.4e-301 1036.6 742 74.0
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 9.4e-301 1036.6 740 74.1
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 2.9e-225 785.8 752 57.7
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 8.2e-220 767.7 755 58.4
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.1e-219 767.3 755 57.1
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.0e-219 765.4 749 57.3
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 4.0e-219 765.4 750 58.3
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.3e-214 749.6 752 56.8
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 3.3e-213 745.7 747 56.5
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 3.9e-206 722.2 718 55.6
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.0e-202 709.9 748 55.1
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.1e-200 704.1 744 54.8
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.7e-196 690.3 748 54.0
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 3.7e-196 689.1 731 54.6
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.3e-196 688.3 748 54.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 3.5e-194 682.6 749 52.9
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.0e-193 681.0 746 52.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.8e-193 679.1 748 53.5
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.7e-191 672.9 739 53.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.3e-190 669.8 752 52.0
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 9.7e-189 664.5 727 52.4
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 7.0e-187 658.3 735 52.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.1e-183 646.7 760 51.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 4.0e-182 642.5 755 51.1
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.5e-181 640.6 752 50.9
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 4.4e-181 639.0 706 52.4
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 5.7e-181 638.6 694 52.0
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.7e-180 637.1 687 53.1
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 3.7e-180 636.0 658 54.9
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 6.3e-180 635.2 736 49.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.4e-179 633.3 727 50.9
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 5.3e-179 632.1 754 49.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 2.9e-177 626.3 695 51.5
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.2e-175 620.9 730 49.7
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.7e-175 619.0 691 51.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.2e-172 610.1 757 48.2
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 3.8e-169 599.4 731 49.4
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 6.6e-169 598.6 694 49.4
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 6.1e-167 592.0 759 50.5
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 6.3e-164 582.0 759 46.2
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.1e-163 581.3 756 46.0
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.4e-163 580.1 741 46.7
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 5.4e-163 578.9 764 47.1
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.9e-161 572.8 756 45.6
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 3.9e-161 572.8 710 47.7
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 7.3e-160 568.5 751 45.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.4e-155 554.3 733 46.2
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.6e-151 540.8 762 44.0
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 8.9e-150 535.0 756 44.4
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 3.4e-149 533.1 757 44.3
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.9e-147 527.3 753 44.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 7.8e-146 521.9 746 43.4
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 3.0e-145 520.0 718 44.7
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.5e-144 516.9 788 42.4
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.5e-144 516.9 788 42.4
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 6.2e-143 512.3 755 43.8
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.8e-142 510.8 764 43.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 3.1e-142 510.0 710 45.4
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 6.8e-142 508.8 723 44.8
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.4e-139 501.1 673 45.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 2.4e-139 500.4 700 43.6
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.9e-136 490.7 835 41.1
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 5.6e-136 489.2 742 44.2
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 9.6e-136 488.4 744 42.9
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.8e-135 486.9 771 41.6
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.4e-131 473.8 703 44.7
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 3.9e-129 466.5 694 42.7
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 6.6e-129 465.7 549 51.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.2e-125 454.9 607 44.5
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.1e-118 431.8 674 42.9
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 8.7e-113 412.1 724 40.1
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 6.5e-108 396.0 306 68.0
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 6.7e-105 386.0 738 38.2
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.4e-102 378.3 335 61.2
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.8e-95 354.0 388 53.9
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.7e-95 353.6 482 45.6
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 9.7e-88 328.9 245 69.4
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.1e-86 325.5 622 36.8
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.5e-85 320.1 255 61.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.2e-82 312.0 307 54.1
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 5.3e-78 296.6 267 56.9
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 5.0e-68 263.5 158 86.1
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.7e-52 211.8 445 34.6
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 1.7e-52 211.8 317 42.3
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.8e-49 201.8 158 67.7
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.2e-45 189.1 325 39.1
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 7.0e-38 163.3 184 52.7
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 3.4e-32 144.4 102 69.6
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 4.0e-25 120.9 186 39.2
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 4.1e-22 110.9 156 44.2
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 3.6e-18 97.8 155 41.9
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 1.8e-17 95.5 83 56.6
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 7.6e-16 90.1 84 51.2
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 8.1e-10 70.1 256 24.6
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 2.0e-08 65.5 96 43.8


User provided reference genes

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