Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G187000 Theobroma cacao HOM05D000208 ORTHO05D410018 2.5e-43 178.3 86 100.0
Thecc.06G187200 Theobroma cacao HOM05D000208 ORTHO05D000130 2.6e-24 115.2 62 90.3
Duzib235G1204 Durio zibethinus HOM05D000208 ORTHO05D000130 1.3e-23 112.8 62 87.1
Thecc.06G186800 Theobroma cacao HOM05D000208 ORTHO05D000130 5.5e-11 70.9 63 55.6
COL.COLO4_31468 Corchorus olitorius HOM05D000208 ORTHO05D000130 1.0e-09 66.6 63 49.2
Duzib235G1130 Durio zibethinus HOM05D000208 ORTHO05D000130 1.0e-09 66.6 63 46.0
Gohir.A06G210300 Gossypium hirsutum HOM05D000208 ORTHO05D000130 6.8e-09 63.9 63 49.2
Gohir.A06G210400 Gossypium hirsutum HOM05D000208 ORTHO05D000130 6.8e-09 63.9 62 48.4
Gohir.D06G210700 Gossypium hirsutum HOM05D000208 ORTHO05D000130 1.5e-08 62.8 63 49.2
Cfa003524 Carpinus fangiana HOM05D000208 ORTHO05D000130 3.4e-08 61.6 63 50.8
Hma1.2p1_0686F.1_g203361 Hydrangea macrophylla HOM05D000208 ORTHO05D000130 3.4e-08 61.6 63 49.2
Gorai.010G255600 Gossypium raimondii HOM05D000208 ORTHO05D000130 4.4e-08 61.2 63 47.6
Nn6g35701 Nelumbo nucifera HOM05D000208 ORTHO05D000130 4.4e-08 61.2 63 49.2
Cpa.g.sc27.29 Carica papaya HOM05D000208 ORTHO05D000130 5.7e-08 60.8 64 50.0
Gorai.010G255700 Gossypium raimondii HOM05D000208 ORTHO05D000130 5.7e-08 60.8 62 46.8
QL05p004060 Quercus lobata HOM05D000208 ORTHO05D000130 5.7e-08 60.8 63 49.2
CiPaw.01G217600 Carya illinoinensis HOM05D000208 ORTHO05D000130 7.5e-08 60.5 63 49.2
Gorai.006G087200 Gossypium raimondii HOM05D000208 ORTHO05D000130 9.8e-08 60.1 65 47.7
Eucgr.J02807 Eucalyptus grandis HOM05D000208 ORTHO05D000130 1.3e-07 59.7 63 49.2
Psat4g168720 Pisum sativum HOM05D000208 ORTHO05D000130 1.3e-07 59.7 63 47.6
Sabra01G0125800 Salix brachista HOM05D000208 ORTHO05D000130 1.3e-07 59.7 68 44.1
Atru.chr1.4003 Acer truncatum HOM05D000208 ORTHO05D000130 1.7e-07 59.3 68 45.6
ATR0598G307 Amborella trichopoda HOM05D000208 ORTHO05D000130 2.2e-07 58.9 72 41.7
Haze_16042 Corylus avellana HOM05D000208 ORTHO05D000130 2.2e-07 58.9 63 47.6
Potri.001G167700 Populus trichocarpa HOM05D000208 ORTHO05D000130 2.2e-07 58.9 68 44.1
CSS0000943 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 2.8e-07 58.5 63 49.2
CSS0025874 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 2.8e-07 58.5 63 49.2
CSS0031618 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 2.8e-07 58.5 63 49.2
SHI00450 Sapria himalayana HOM05D000208 ORTHO05D000130 2.8e-07 58.5 82 37.8
Thecc.06G186900 Theobroma cacao HOM05D000208 ORTHO05D000130 3.7e-07 58.2 64 48.4
TAR624G0057 Trochodendron aralioides HOM05D000208 ORTHO05D000130 3.7e-07 58.2 63 47.6
Dinv20424 Davidia involucrata HOM05D000208 ORTHO05D000130 4.9e-07 57.8 63 47.6
Manes.04G145800 Manihot esculenta HOM05D000208 ORTHO05D000130 4.9e-07 57.8 63 46.0
Aqoxy7G04077 Aquilegia oxysepala HOM05D000208 ORTHO05D000130 6.3e-07 57.4 63 49.2
Cpa.g.sc25.128 Carica papaya HOM05D000208 ORTHO05D000130 6.3e-07 57.4 63 46.0
Gohir.D06G210600 Gossypium hirsutum HOM05D000208 ORTHO05D000130 6.3e-07 57.4 62 45.2
Manes.11G019100 Manihot esculenta HOM05D000208 ORTHO05D000130 6.3e-07 57.4 63 47.6
COL.COLO4_30742 Corchorus olitorius HOM05D000208 ORTHO05D000130 8.3e-07 57.0 63 46.0
Actinidia02882 Actinidia chinensis HOM05D000208 ORTHO05D000130 1.1e-06 56.6 63 44.4
Actinidia25328 Actinidia chinensis HOM05D000208 ORTHO05D000130 1.1e-06 56.6 63 44.4
CDE06G2187 Ceratophyllum demersum HOM05D000208 ORTHO05D000130 1.1e-06 56.6 63 47.6
QL05p004076 Quercus lobata HOM05D000208 ORTHO05D000130 1.1e-06 56.6 63 44.4
TAR624G0783 Trochodendron aralioides HOM05D000208 ORTHO05D000130 1.1e-06 56.6 44 59.1
Gohir.A10G054600 Gossypium hirsutum HOM05D000208 ORTHO05D000130 1.4e-06 56.2 63 44.4
MBI19_g47928_MAGBIO Magnolia biondii HOM05D000208 ORTHO05D000130 1.4e-06 56.2 64 45.3
PGR102G0779 Punica granatum HOM05D000208 ORTHO05D000130 1.8e-06 55.8 63 44.4
CDE04G2036 Ceratophyllum demersum HOM05D000208 ORTHO05D000130 2.4e-06 55.5 63 46.0
Dinv37861 Davidia involucrata HOM05D000208 ORTHO05D000130 2.4e-06 55.5 63 44.4
Duzib235G1046 Durio zibethinus HOM05D000208 ORTHO05D000130 2.4e-06 55.5 63 46.0
Gohir.D10G056600 Gossypium hirsutum HOM05D000208 ORTHO05D000130 2.4e-06 55.5 63 44.4
TWI75G1543 Tripterygium wilfordii HOM05D000208 ORTHO05D000130 2.4e-06 55.5 64 45.3
Ciclev10027295m.g Citrus clementina HOM05D000208 ORTHO05D000130 3.1e-06 55.1 63 44.4
Cc00_g30760 Coffea canephora HOM05D000208 ORTHO05D000130 3.1e-06 55.1 63 44.4
Duzib192G0847 Durio zibethinus HOM05D000208 ORTHO05D000130 3.1e-06 55.1 63 44.4
Thecc.06G121800 Theobroma cacao HOM05D000208 ORTHO05D000130 3.1e-06 55.1 63 44.4
Actinidia26023 Actinidia chinensis HOM05D000208 ORTHO05D000130 4.1e-06 54.7 63 44.4
Ciclev10024819m.g Citrus clementina HOM05D000208 ORTHO05D000130 4.1e-06 54.7 63 44.4
Prupe.3G039200 Prunus persica HOM05D000208 ORTHO05D000130 4.1e-06 54.7 62 43.5
TWI79G1762 Tripterygium wilfordii HOM05D000208 ORTHO05D000130 4.1e-06 54.7 63 44.4
MSTRG.22544 Avicennia marina HOM05D000208 ORTHO05D000130 5.4e-06 54.3 63 44.4
Gorai.011G060400 Gossypium raimondii HOM05D000208 ORTHO05D000130 5.4e-06 54.3 63 42.9
Rhsim12G0210300 Rhododendron simsii HOM05D000208 ORTHO05D000130 5.4e-06 54.3 63 44.4
vmacro22034 Vaccinium macrocarpon HOM05D000208 ORTHO05D000130 5.4e-06 54.3 63 44.4
Lj9A533T76 Lonicera japonica HOM05D000208 ORTHO05D000130 7.0e-06 53.9 63 46.0
Manes.16G028000 Manihot esculenta HOM05D000208 ORTHO05D000130 7.0e-06 53.9 65 44.6
TPR.G16748 Trifolium pratense HOM05D000208 ORTHO05D000130 7.0e-06 53.9 63 41.3
unitig_26.g8926 Utricularia gibba HOM05D000208 ORTHO05D000130 7.0e-06 53.9 63 46.0
CSS0011423 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 9.2e-06 53.5 63 42.9
Lsat_1_v5_gn_3_29601 Lactuca sativa HOM05D000208 ORTHO05D000130 9.2e-06 53.5 64 42.2
PSO135G0265 Papaver somniferum HOM05D000208 ORTHO05D000130 9.2e-06 53.5 44 54.5
PSO724G0434 Papaver somniferum HOM05D000208 ORTHO05D000130 9.2e-06 53.5 44 54.5
THA.LOC104814043 Tarenaya hassleriana HOM05D000208 ORTHO05D000130 9.2e-06 53.5 44 56.8


User provided reference genes

Program Settings