Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 2.1e-147 525.8 285 100.0
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 3.3e-116 422.2 272 83.1
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.5e-108 396.7 285 75.8
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.7e-107 391.7 282 75.2
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 1.9e-103 379.8 284 75.4
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 1.7e-96 356.7 286 71.7
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-85 320.1 288 63.5
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 7.6e-81 304.7 287 61.0
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.7e-80 303.5 293 60.4
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 7.8e-78 294.7 279 58.8
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 3.9e-77 292.4 245 65.3
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.1e-76 290.8 295 58.3
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 5.8e-73 278.5 281 58.0
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 2.9e-72 276.2 303 53.8
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.9e-69 265.8 290 52.8
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 9.6e-68 261.2 286 51.7
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.1e-67 260.0 220 62.7
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 1.7e-64 250.4 277 54.2
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 3.2e-63 246.1 231 58.4
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 3.5e-62 242.7 243 54.7
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 4.6e-62 242.3 264 50.8
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 7.9e-62 241.5 283 49.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.3e-61 240.7 293 50.2
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.9e-61 239.2 289 50.2
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.9e-61 239.2 215 62.3
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 5.1e-61 238.8 292 47.9
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 4.3e-60 235.7 296 48.6
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 2.8e-59 233.0 281 48.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.8e-59 233.0 272 52.6
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 2.8e-59 233.0 281 47.7
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 2.8e-59 233.0 285 49.5
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 6.2e-59 231.9 299 48.5
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 6.2e-59 231.9 297 49.5
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 6.2e-59 231.9 287 48.8
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 8.1e-59 231.5 280 49.6
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 1.1e-58 231.1 282 50.0
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 1.1e-58 231.1 248 52.4
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 3.1e-58 229.6 265 50.6
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 4.0e-58 229.2 296 47.3
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 6.9e-58 228.4 265 50.6
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-57 227.3 297 47.8
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-57 227.3 297 47.8
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 8.4e-56 221.5 282 48.9
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 1.1e-55 221.1 281 46.3
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.2e-55 219.5 186 68.3
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 6.0e-54 215.3 283 46.3
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.8e-53 213.8 259 48.6
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 2.3e-53 213.4 248 50.0
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 3.9e-53 212.6 237 54.0
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 5.1e-53 212.2 278 47.5
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 6.7e-53 211.8 277 46.2
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 5.6e-52 208.8 248 49.6
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 5.6e-52 208.8 296 43.6
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 2.1e-51 206.8 253 49.4
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 2.8e-51 206.5 280 45.4
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.1e-50 204.5 300 45.3
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.5e-49 200.7 278 41.7
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 3.4e-49 199.5 291 46.7
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 2.2e-48 196.8 237 51.9
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 4.9e-48 195.7 179 59.8
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 2.5e-47 193.4 289 42.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 3.2e-47 193.0 280 44.3
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 4.2e-47 192.6 236 49.2
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 2.7e-46 189.9 278 42.1
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 6.0e-46 188.7 252 46.4
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 6.0e-46 188.7 275 43.3
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 6.0e-46 188.7 267 43.1
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 6.0e-46 188.7 185 54.6
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 7.9e-46 188.3 196 51.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 4.8e-43 179.1 297 41.1
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 1.8e-42 177.2 180 54.4
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 1.2e-41 174.5 234 45.3
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 1.2e-41 174.5 246 41.5
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.5e-41 174.1 232 44.8
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 5.9e-41 172.2 269 40.5
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 7.7e-41 171.8 230 44.8
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 7.7e-41 171.8 285 41.8
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.3e-40 171.0 187 49.7
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 6.5e-40 168.7 281 42.7
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 9.4e-39 164.9 282 40.8
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.0e-37 161.4 296 37.8
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.3e-37 160.2 264 38.3
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 2.0e-36 157.1 260 41.5
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.3e-35 154.5 266 39.8
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 1.1e-34 151.4 264 37.9
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 1.2e-33 147.9 256 42.2
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.4e-33 146.4 203 42.9
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.4e-33 146.4 203 42.9
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 5.0e-32 142.5 213 41.3
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 5.0e-32 142.5 163 50.9
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 5.9e-25 119.0 288 33.3
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 3.8e-24 116.3 120 52.5
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.4e-23 114.4 171 43.9
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.6e-20 103.6 70 75.7
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.4e-20 102.1 71 73.2
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.4e-20 102.1 71 73.2
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 5.9e-17 92.4 323 26.6
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 1.0e-16 91.7 215 32.6
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.9e-16 90.1 216 32.9
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 2.1e-14 84.0 141 37.6
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 1.0e-13 81.6 101 43.6
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 4.8e-11 72.8 338 24.9
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 2.0e-09 67.4 281 26.7
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 3.8e-08 63.2 67 44.8
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 1.6e-06 57.8 160 26.9
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 3.6e-06 56.6 189 27.5


User provided reference genes

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