Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 0.0e+00 1221.8 625 100.0
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 1.9e-294 1015.4 625 84.2
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 8.3e-282 973.4 625 79.8
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 2.1e-277 958.7 625 78.7
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 6.2e-277 957.2 626 78.9
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 4.4e-267 924.5 587 81.3
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 7.6e-227 790.8 627 65.6
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 6.1e-216 754.6 622 60.5
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 4.1e-212 741.9 602 61.8
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 1.5e-211 740.0 619 60.6
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 2.2e-210 736.1 602 62.6
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 5.0e-210 734.9 625 61.6
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 4.7e-208 728.4 627 60.4
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 7.9e-208 727.6 629 59.8
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 4.8e-205 718.4 598 61.7
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 8.2e-205 717.6 631 59.4
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 1.0e-202 710.7 625 58.9
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 6.5e-202 708.0 622 59.6
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 3.9e-199 698.7 614 60.6
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 6.7e-199 698.0 627 58.1
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.7e-198 694.9 557 64.5
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 9.7e-198 694.1 626 57.5
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 6.3e-197 691.4 626 58.1
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 7.2e-193 677.9 620 56.5
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.8e-191 673.3 621 56.0
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 3.0e-191 672.5 625 56.8
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 4.0e-191 672.2 621 56.2
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.5e-190 670.2 622 55.5
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.8e-189 666.0 601 57.4
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 4.8e-189 665.2 624 55.4
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 6.3e-189 664.8 621 55.7
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 5.3e-188 661.8 623 55.2
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 2.0e-187 659.8 538 64.3
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 1.1e-185 654.1 620 54.8
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.9e-185 653.3 622 56.1
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 2.5e-185 652.9 597 56.1
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 4.2e-185 652.1 596 55.9
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 4.2e-185 652.1 623 55.9
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 9.4e-185 651.0 614 55.4
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.6e-184 649.0 611 55.6
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 2.3e-183 646.4 600 56.3
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 2.3e-183 646.4 613 54.6
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 4.0e-183 645.6 615 54.8
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 4.0e-183 645.6 614 55.2
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 6.8e-183 644.8 626 54.3
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 1.2e-182 644.0 620 54.2
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 5.7e-182 641.7 607 55.8
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 7.5e-182 641.3 627 55.7
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.7e-181 640.2 664 52.6
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 3.7e-181 639.0 619 54.9
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 1.6e-179 633.6 628 54.5
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.5e-177 627.1 651 52.1
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 3.6e-176 622.5 629 54.1
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.5e-174 617.1 622 54.7
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 2.0e-174 616.7 617 52.0
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.7e-174 615.1 606 55.1
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.3e-173 614.0 704 48.4
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 1.1e-172 610.9 627 53.0
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 7.8e-171 604.7 616 51.3
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 7.8e-171 604.7 666 51.2
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 1.0e-170 604.4 596 53.9
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 7.5e-166 588.2 644 50.0
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 3.2e-164 582.8 570 52.5
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 5.4e-164 582.0 570 52.1
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 7.0e-164 581.6 628 48.9
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 9.2e-164 581.3 628 50.8
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.2e-163 580.9 630 50.2
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 6.0e-163 578.6 451 62.3
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 1.0e-162 577.8 605 49.6
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 2.5e-161 573.2 574 52.3
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 3.6e-160 569.3 628 47.3
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 8.0e-160 568.2 669 48.3
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 1.1e-159 567.8 631 50.4
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 2.6e-158 563.1 669 48.0
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 4.0e-151 539.3 650 47.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 3.4e-150 536.2 421 61.8
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 9.5e-145 518.1 421 59.6
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 2.1e-144 516.9 466 60.5
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 8.1e-144 515.0 459 58.0
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 1.4e-140 504.2 634 45.3
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 4.2e-140 502.7 593 46.7
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.0e-138 498.0 445 58.0
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 2.3e-138 496.9 421 62.7
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.4e-135 486.9 564 48.9
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 9.3e-132 474.9 573 46.8
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 2.4e-127 460.3 609 45.2
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.4e-126 456.4 612 42.5
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 5.8e-126 455.7 453 56.3
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 9.9e-126 454.9 628 43.2
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.5e-121 441.0 381 58.5
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.2e-118 431.4 417 53.7
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.8e-118 429.1 398 56.3
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 3.2e-116 423.3 409 56.0
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 7.1e-116 422.2 496 45.6
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 1.6e-115 421.0 632 42.2
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 4.6e-115 419.5 608 41.6
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 8.2e-112 408.7 421 52.5
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 5.3e-111 406.0 470 49.1
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 3.3e-97 360.1 586 36.9
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.4e-95 354.8 634 37.1
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 5.0e-93 346.3 626 35.8
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.1e-71 273.9 294 50.0
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 1.0e-58 232.3 589 28.0
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 5.9e-54 216.5 233 48.5
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 2.6e-49 201.1 213 50.7
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 7.0e-47 193.0 266 43.6
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 2.7e-46 191.0 202 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 1.1e-44 185.7 632 25.5
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 8.1e-35 152.9 219 38.4
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.9e-31 141.7 208 38.5
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.2e-30 139.0 303 31.4
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 3.9e-29 134.0 158 42.4
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 1.3e-19 102.4 359 28.4
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 5.3e-18 97.1 96 59.4
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 1.4e-15 89.0 93 52.7
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 4.2e-15 87.4 65 66.2
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 5.4e-15 87.0 175 38.9
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 5.1e-13 80.5 174 35.1
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 2.5e-12 78.2 49 73.5
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 7.3e-12 76.6 72 56.9
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.6e-11 75.5 76 55.3
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 1.8e-10 72.0 70 54.3
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.5e-09 68.9 63 57.1


User provided reference genes

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