Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 2.2e-111 405.6 203 100.0
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 5.0e-95 351.3 203 87.2
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.0e-92 343.6 205 86.3
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 1.0e-92 343.6 205 86.3
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.4e-92 343.2 205 86.3
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 8.3e-82 307.4 190 84.7
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.9e-78 296.2 205 75.6
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 5.6e-78 294.7 198 77.3
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.4e-76 290.0 211 73.5
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.4e-76 290.0 211 73.5
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 1.5e-75 286.6 174 81.0
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 2.0e-75 286.2 164 84.8
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 4.4e-75 285.0 174 79.9
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 9.8e-75 283.9 203 72.4
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 1.3e-74 283.5 174 79.9
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.3e-74 283.5 194 73.2
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.1e-73 280.4 174 78.7
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 1.4e-73 280.0 165 82.4
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 2.4e-73 279.3 165 82.4
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 2.4e-73 279.3 176 79.5
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 2.4e-73 279.3 164 84.8
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 3.2e-73 278.9 167 81.4
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 4.1e-73 278.5 182 78.0
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 5.4e-73 278.1 193 75.6
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 7.1e-73 277.7 186 74.7
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 9.2e-73 277.3 164 81.1
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 9.2e-73 277.3 198 71.7
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.6e-72 276.6 175 77.7
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 6.0e-72 274.6 167 79.6
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 6.0e-72 274.6 198 74.7
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 7.8e-72 274.2 165 79.4
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 1.3e-71 273.5 164 79.9
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 3.0e-71 272.3 157 83.4
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 3.0e-71 272.3 165 80.0
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 3.0e-71 272.3 181 74.6
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 5.1e-71 271.6 192 71.9
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 6.6e-71 271.2 168 80.4
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 6.6e-71 271.2 196 73.0
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 8.6e-71 270.8 167 80.8
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 4.3e-70 268.5 157 81.5
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 9.5e-70 267.3 175 77.1
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 2.8e-69 265.8 175 76.6
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 4.7e-69 265.0 167 80.2
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 4.7e-69 265.0 178 77.5
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 8.1e-69 264.2 206 69.4
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 1.1e-68 263.8 171 78.4
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 1.4e-68 263.5 174 74.1
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 2.3e-68 262.7 157 82.8
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 3.1e-68 262.3 162 80.9
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 8.9e-68 260.8 176 73.9
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 8.9e-68 260.8 157 80.3
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 8.9e-68 260.8 194 70.1
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 8.9e-68 260.8 157 81.5
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 8.9e-68 260.8 157 81.5
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.2e-67 260.4 157 81.5
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 4.4e-67 258.5 167 76.6
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 9.9e-67 257.3 178 75.3
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 1.3e-66 256.9 177 74.0
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 2.9e-66 255.8 156 80.1
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 6.4e-66 254.6 165 77.0
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.1e-65 253.8 161 78.9
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.9e-65 253.1 164 79.3
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 3.2e-65 252.3 157 77.1
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 7.1e-65 251.1 153 79.1
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.2e-64 250.4 158 79.1
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 3.5e-64 248.8 162 77.2
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 3.5e-64 248.8 152 79.6
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 7.8e-64 247.7 152 80.3
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 1.7e-63 246.5 179 68.7
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 8.6e-63 244.2 193 68.4
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 1.5e-62 243.4 168 71.4
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 1.5e-62 243.4 152 78.9
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 3.3e-62 242.3 173 74.0
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 7.3e-62 241.1 173 73.4
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 7.3e-62 241.1 173 73.4
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 2.1e-61 239.6 164 71.3
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 4.7e-61 238.4 257 54.9
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 6.2e-61 238.0 137 84.7
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 6.8e-60 234.6 162 72.2
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 1.2e-59 233.8 165 71.5
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 2.0e-59 233.0 142 79.6
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 3.4e-59 232.3 195 63.6
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 4.4e-59 231.9 163 71.8
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 9.9e-59 230.7 144 77.1
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 4.9e-58 228.4 166 70.5
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 6.4e-58 228.0 142 78.9
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 4.2e-57 225.3 128 84.4
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 1.6e-56 223.4 217 59.0
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 1.0e-55 220.7 163 63.8
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.3e-55 220.3 158 65.8
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 8.7e-55 217.6 165 65.5
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 2.1e-53 213.0 158 64.6
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 6.2e-53 211.5 167 67.1
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 8.1e-53 211.1 206 59.7
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 4.3e-46 188.7 183 57.4
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.5e-43 180.3 164 60.4
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 1.3e-42 177.2 153 58.2
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 2.7e-40 169.5 103 73.8
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 7.9e-40 167.9 162 58.0
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 1.3e-39 167.2 115 67.0
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 5.1e-39 165.2 173 54.9
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 2.5e-38 162.9 128 68.0
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 5.6e-38 161.8 156 53.2
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 1.6e-37 160.2 97 84.5
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 2.1e-37 159.8 166 53.6
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 1.1e-36 157.5 95 77.9
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 1.9e-30 136.7 79 74.7
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 9.6e-30 134.4 153 50.3
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 6.3e-29 131.7 159 41.5
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-21 104.8 67 65.7
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 2.5e-17 93.2 146 41.8
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 4.2e-17 92.4 79 64.6
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 9.4e-09 64.7 46 73.9


User provided reference genes

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