Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 0.0e+00 1384.4 765 100.0
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 3.8e-260 901.7 781 71.1
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 4.6e-250 868.2 794 66.8
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 1.8e-233 813.1 749 63.8
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.9e-227 793.1 785 60.9
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.0e-212 744.2 771 59.3
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 1.7e-191 673.7 860 53.5
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 8.7e-108 395.6 795 38.9
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 1.1e-105 388.7 787 38.6
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 1.9e-102 377.9 788 37.7
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 2.0e-96 357.8 840 35.2
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 5.5e-94 349.7 795 38.0
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 6.7e-92 342.8 813 35.5
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 3.1e-89 334.0 806 36.2
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 7.7e-88 329.3 946 32.3
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 9.7e-83 312.4 804 36.4
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 3.1e-81 307.4 803 34.2
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 7.7e-80 302.8 787 37.6
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 4.2e-78 297.0 825 32.4
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 7.2e-78 296.2 830 32.2
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 1.0e-76 292.4 806 33.4
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 1.8e-76 291.6 824 33.4
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.4e-73 282.0 822 32.4
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 5.9e-72 276.6 849 31.7
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 1.0e-71 275.8 798 32.1
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 4.7e-69 266.9 779 34.3
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 3.7e-66 257.3 816 31.6
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.4e-65 255.4 821 31.9
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 1.0e-63 249.2 804 31.2
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 2.3e-63 248.1 797 32.0
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 3.6e-61 240.7 799 29.7
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 1.4e-60 238.8 788 32.7
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 2.6e-59 234.6 776 31.3
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 4.4e-59 233.8 848 30.7
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 5.7e-59 233.4 858 28.4
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 1.3e-58 232.3 814 29.1
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 1.8e-57 228.4 783 30.1
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 1.8e-57 228.4 782 32.6
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 1.5e-51 208.8 804 28.9
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 1.9e-49 201.8 776 29.3
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 1.2e-48 199.1 455 35.6
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 2.7e-48 198.0 821 29.2
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 6.0e-48 196.8 811 29.2
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 6.0e-48 196.8 793 29.0
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 3.9e-47 194.1 813 30.0
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 3.6e-45 187.6 828 28.9
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 8.9e-44 183.0 794 29.1
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 3.4e-43 181.0 811 27.4
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 7.5e-43 179.9 893 27.0
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 6.4e-42 176.8 799 28.4
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.1e-41 176.0 792 29.2
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.0e-39 169.5 801 28.5
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 1.0e-39 169.5 815 28.7
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 1.7e-39 168.7 955 27.3
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 3.0e-39 167.9 801 27.7
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 8.6e-39 166.4 855 27.0
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 1.9e-38 165.2 832 28.5
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 4.3e-38 164.1 902 27.2
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 9.5e-38 162.9 375 43.5
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 6.2e-37 160.2 754 27.6
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 6.2e-37 160.2 531 29.4
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 1.1e-36 159.5 846 26.2
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 1.4e-36 159.1 833 28.0
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 1.4e-36 159.1 502 30.3
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 2.0e-35 155.2 742 25.9
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 7.6e-35 153.3 827 27.3
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 1.7e-34 152.1 809 28.2
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 1.2e-32 146.0 842 26.8
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 2.1e-32 145.2 883 26.0
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 2.1e-32 145.2 832 26.2
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.0e-31 142.9 638 27.1
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 1.3e-31 142.5 785 27.3
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 1.7e-31 142.1 126 60.3
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 2.3e-31 141.7 887 26.0
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 2.3e-31 141.7 794 27.0
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 2.5e-30 138.3 168 53.6
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 9.6e-30 136.3 809 27.1
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 1.1e-28 132.9 889 25.5
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 1.1e-28 132.9 179 48.0
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 1.2e-27 129.4 502 29.3
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 5.8e-27 127.1 259 39.4
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 1.4e-25 122.5 142 49.3
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 4.6e-24 117.5 150 51.3
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.0e-23 116.3 106 55.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 1.3e-23 115.9 771 25.2
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 3.0e-23 114.8 485 29.5
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 5.6e-22 110.5 145 47.6
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 6.2e-21 107.1 846 24.3
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.4e-20 105.9 846 24.7
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 2.0e-19 102.1 235 35.3
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 1.3e-18 99.4 95 55.8
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 8.4e-18 96.7 853 25.3
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 4.2e-17 94.4 145 44.1
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 4.2e-17 94.4 86 53.5
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 7.1e-17 93.6 148 40.5
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.2e-16 92.8 801 24.5
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 3.5e-16 91.3 745 25.0
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 4.6e-16 90.9 82 58.5
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 1.0e-15 89.7 84 52.4
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.1e-14 86.3 94 48.9
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 1.1e-14 86.3 247 34.4
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 1.3e-13 82.8 256 29.3
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 3.7e-13 81.3 748 24.5
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 3.1e-12 78.2 825 22.1
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.2e-11 76.3 58 56.9
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.3e-10 72.8 58 55.2
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 2.2e-10 72.0 65 60.0
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 8.4e-10 70.1 58 58.6
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 7.1e-09 67.0 70 52.9
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 2.1e-08 65.5 66 54.5
BcaC09g51502 Brassica carinata HOM05D010718 ORTHO05D008037 5.1e-07 60.8 148 37.8
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.7e-07 60.1 40 67.5
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 8.7e-07 60.1 369 23.6
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 4.3e-06 57.8 34 79.4


User provided reference genes

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