Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 3.7e-77 291.6 159 100.0
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 8.5e-66 253.8 157 90.4
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.5e-65 253.1 157 89.8
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 9.4e-65 250.4 157 89.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-64 250.0 157 89.8
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.9e-59 231.1 157 84.7
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.9e-58 228.8 157 84.1
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.2e-57 224.9 157 84.1
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 5.6e-49 198.0 159 72.3
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 5.6e-49 198.0 159 72.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 4.0e-47 191.8 156 71.2
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.6e-46 189.1 159 69.8
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 1.7e-45 186.4 163 68.7
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.7e-45 185.3 164 68.9
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 9.2e-44 180.6 163 67.5
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.7e-43 179.1 156 67.3
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 2.7e-43 179.1 160 68.8
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 6.0e-43 177.9 156 66.7
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.0e-43 177.9 156 66.7
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 6.0e-43 177.9 159 67.3
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 3.0e-42 175.6 156 67.9
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 3.9e-42 175.3 163 68.7
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 8.6e-42 174.1 159 68.6
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.1e-41 173.7 156 66.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.5e-41 172.6 159 67.3
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.5e-41 172.6 159 69.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 3.3e-41 172.2 156 66.0
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 9.5e-41 170.6 162 67.3
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 9.5e-41 170.6 162 67.3
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.1e-40 169.5 163 65.6
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 3.6e-40 168.7 161 65.8
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.1e-39 167.2 161 68.3
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 4.0e-39 165.2 157 65.0
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 1.5e-38 163.3 158 62.0
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-37 159.8 156 63.5
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 3.7e-37 158.7 164 62.8
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 3.7e-37 158.7 160 66.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 4.9e-37 158.3 115 79.1
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.1e-36 155.2 198 54.0
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.2e-35 153.7 142 66.2
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.2e-35 153.7 141 65.2
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.2e-35 153.7 141 65.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 1.6e-35 153.3 166 61.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.6e-35 153.3 147 67.3
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 2.7e-35 152.5 140 67.9
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 2.7e-35 152.5 157 60.5
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.0e-35 151.4 165 60.6
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 6.0e-35 151.4 139 64.0
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 7.8e-35 151.0 158 63.3
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 7.8e-35 151.0 152 63.2
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 7.8e-35 151.0 165 60.6
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.0e-34 150.6 139 65.5
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.7e-34 149.8 163 59.5
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.7e-34 149.8 157 60.5
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.7e-34 149.8 163 61.3
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 2.3e-34 149.4 163 60.7
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.3e-34 149.4 153 62.1
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 3.0e-34 149.1 136 66.9
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 3.0e-34 149.1 166 60.8
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 3.9e-34 148.7 140 67.1
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 3.9e-34 148.7 140 67.9
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 3.9e-34 148.7 163 62.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 3.9e-34 148.7 140 67.9
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 3.9e-34 148.7 163 62.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 5.1e-34 148.3 167 59.3
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 5.1e-34 148.3 163 62.6
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.5e-33 146.7 139 62.6
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 3.3e-33 145.6 138 63.8
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 4.3e-33 145.2 139 65.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 4.3e-33 145.2 144 63.2
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 5.6e-33 144.8 139 66.2
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 5.6e-33 144.8 158 63.9
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 9.5e-33 144.1 166 58.4
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 9.5e-33 144.1 157 60.5
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 4.7e-32 141.7 158 58.2
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.1e-31 140.6 158 58.2
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.4e-31 140.2 141 63.1
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.4e-31 140.2 138 63.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.8e-31 139.8 155 60.0
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.8e-31 139.8 161 59.6
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.8e-31 139.8 161 59.6
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.8e-31 139.8 161 59.6
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.3e-31 139.4 151 61.6
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.3e-31 139.4 137 63.5
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 3.1e-31 139.0 107 75.7
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.1e-31 139.0 137 66.4
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 4.0e-31 138.7 140 65.7
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 4.0e-31 138.7 156 57.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 6.8e-31 137.9 150 59.3
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 8.9e-31 137.5 156 58.3
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 1.2e-30 137.1 151 59.6
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 2.0e-30 136.3 79 91.1
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 2.2e-29 132.9 142 62.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 2.9e-29 132.5 130 67.7
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 6.4e-29 131.3 128 64.1
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.1e-28 130.6 86 81.4
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 5.4e-28 128.3 106 68.9
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 9.2e-28 127.5 164 57.3
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.2e-27 127.1 145 62.1
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 3.5e-27 125.6 124 64.5
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 3.5e-27 125.6 156 55.8
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 6.0e-27 124.8 146 55.5
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.7e-26 123.2 153 54.9
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 7.3e-25 117.9 135 57.8
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.6e-24 116.7 154 52.6
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.8e-24 115.9 144 54.9
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 6.2e-24 114.8 152 53.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 6.2e-24 114.8 106 65.1
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 6.2e-24 114.8 162 50.6
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 8.9e-23 110.9 80 77.5
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 1.2e-22 110.5 89 73.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.5e-22 110.2 94 69.1
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.5e-22 110.2 94 69.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.5e-22 110.2 158 50.6
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 2.6e-22 109.4 77 80.5
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 3.4e-22 109.0 102 64.7
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.4e-22 108.6 106 64.2
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 5.8e-22 108.2 66 86.4
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 9.9e-22 107.5 107 63.6
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 4.0e-15 85.5 119 53.8
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.2e-13 79.7 59 76.3
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.1e-12 77.4 128 50.8
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.3e-12 74.3 132 47.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 4.6e-11 72.0 104 53.8
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 2.3e-10 69.7 142 41.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 3.9e-10 68.9 132 47.0
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 3.9e-10 68.9 65 67.7
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.8e-07 60.1 46 73.9


User provided reference genes

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