Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 3.3e-264 914.4 456 100.0
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 3.6e-234 814.7 458 90.8
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.0e-233 813.1 458 90.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 3.0e-204 715.3 458 82.5
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 2.1e-202 709.1 465 78.7
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 2.8e-202 708.8 461 78.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 4.0e-201 704.9 457 78.8
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.7e-199 699.5 457 78.3
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.2e-198 695.3 458 78.4
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 7.1e-198 694.1 464 77.6
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 8.7e-196 687.2 441 77.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 1.9e-195 686.0 453 78.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.9e-195 686.0 460 76.5
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 2.5e-195 685.6 466 76.4
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.8e-194 682.2 455 76.9
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 4.8e-194 681.4 460 77.2
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.2e-194 681.0 455 76.5
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 8.1e-194 680.6 470 73.8
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.1e-193 680.2 456 77.9
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.1e-193 680.2 462 76.2
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.8e-193 679.5 441 77.1
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 6.9e-193 677.6 441 76.2
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 6.9e-193 677.6 461 75.7
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.6e-192 675.6 397 82.9
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 3.8e-191 671.8 498 71.7
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 8.4e-191 670.6 452 76.8
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.4e-190 669.8 450 76.2
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.0e-188 663.7 412 80.1
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.8e-188 662.9 399 81.7
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 3.0e-188 662.1 470 73.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.0e-188 662.1 387 84.5
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.3e-187 658.7 387 83.7
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 7.4e-187 657.5 457 73.7
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 1.5e-184 649.8 485 71.5
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 7.6e-184 647.5 463 72.1
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 9.9e-184 647.1 419 77.6
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.6e-181 639.8 399 78.9
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.6e-181 638.3 399 78.7
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 3.0e-180 635.6 449 74.2
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 3.0e-180 635.6 483 69.2
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.0e-180 635.6 454 73.6
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 6.7e-180 634.4 411 77.9
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 8.7e-180 634.0 457 72.9
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 9.6e-179 630.6 452 73.5
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.3e-178 630.2 403 78.4
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.3e-178 630.2 376 82.4
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.6e-178 629.8 450 72.9
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 3.7e-178 628.6 449 73.3
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 3.7e-178 628.6 454 73.1
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 4.8e-178 628.2 394 78.7
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 6.2e-178 627.9 458 72.9
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.1e-177 627.1 397 79.1
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.2e-176 623.6 485 67.4
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.5e-176 623.2 480 69.8
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.6e-176 622.5 419 75.7
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 4.5e-176 621.7 599 58.8
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 4.5e-176 621.7 411 75.4
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 5.8e-176 621.3 475 70.1
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.1e-174 617.1 390 80.0
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.9e-174 616.3 393 80.9
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 3.2e-174 615.5 398 78.4
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 4.2e-174 615.1 421 74.3
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 7.1e-174 614.4 479 69.7
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.5e-173 612.1 475 67.8
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-172 610.1 386 79.5
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.1e-171 607.1 381 80.3
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.3e-170 603.6 408 76.0
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 5.0e-167 591.7 376 78.5
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.1e-166 590.5 434 68.9
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.5e-166 589.3 482 65.4
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 6.7e-164 581.3 401 73.1
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 6.7e-164 581.3 452 68.6
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 8.7e-164 580.9 411 72.3
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.6e-162 576.6 354 80.5
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.5e-158 562.8 497 63.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.0e-156 557.4 347 81.0
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 6.7e-156 554.7 420 69.5
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 5.7e-155 551.6 440 66.8
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 3.1e-153 545.8 407 68.3
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.2e-150 535.8 358 77.7
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.8e-146 522.7 457 64.6
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.8e-145 520.0 430 62.8
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.0e-144 516.5 382 66.2
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 6.5e-143 511.5 399 67.7
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.1e-142 510.8 426 66.0
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.5e-142 509.6 460 61.5
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.4e-140 503.8 455 62.9
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 3.3e-139 499.2 402 65.2
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.7e-135 486.9 348 73.3
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 5.7e-131 471.9 389 67.6
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 1.2e-128 464.2 366 69.4
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 3.3e-118 429.5 302 74.5
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.0e-116 424.5 406 53.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-116 424.1 261 81.6
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.7e-112 409.8 263 77.9
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 6.6e-111 405.2 401 53.9
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 3.5e-104 382.9 461 47.3
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.4e-91 339.3 207 82.6
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 5.4e-89 332.4 203 78.3
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.7e-87 327.4 249 73.5
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.0e-87 326.6 251 73.3
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.5e-86 323.6 534 40.8
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 6.0e-80 302.4 251 67.3
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.4e-76 290.4 186 74.2
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.4e-76 290.4 185 75.7
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 4.5e-75 286.2 173 83.2
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.6e-69 267.7 190 69.5
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 6.9e-68 262.3 156 82.1
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 2.9e-66 256.9 155 80.6
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.1e-65 255.0 325 48.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-65 254.6 149 84.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 2.3e-63 247.3 235 59.6
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 3.3e-62 243.4 253 58.9
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 3.3e-62 243.4 253 58.9
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 3.3e-62 243.4 253 58.9
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 3.7e-61 240.0 180 69.4
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 5.8e-59 232.6 255 58.4
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.8e-58 229.9 149 77.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.3e-54 216.5 165 64.8
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 1.0e-50 205.3 134 72.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 3.9e-47 193.4 122 75.4
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.1e-44 185.3 149 70.5
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.1e-41 175.3 108 79.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.4e-36 157.5 101 75.2
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 5.9e-35 152.9 116 69.8
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 8.5e-34 149.1 144 55.6
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.1e-32 144.4 74 90.5
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-30 138.7 100 74.0
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-30 138.3 100 74.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 9.1e-28 129.0 153 51.6
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 8.5e-26 122.5 74 81.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.0e-22 111.3 167 40.7
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.8e-21 107.5 86 61.6
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 5.3e-20 103.2 180 40.0
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.6e-19 101.7 62 79.0
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 2.6e-14 84.3 58 74.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 5.4e-12 76.6 117 38.5
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.5e-06 58.5 132 32.6
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 2.0e-06 58.2 44 59.1
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 2.6e-06 57.8 76 47.4


User provided reference genes

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