Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 9.9e-106 387.5 317 100.0
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.7e-103 379.4 316 88.6
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.2e-100 370.5 316 96.2
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.6e-100 370.2 316 96.5
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 5.2e-99 365.2 315 95.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 9.9e-98 360.9 316 95.3
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 3.8e-89 332.4 316 82.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.9e-88 330.1 316 80.4
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.9e-88 330.1 318 78.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 2.4e-88 329.7 317 78.9
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 3.2e-88 329.3 316 83.9
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 7.9e-87 324.7 317 82.6
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 3.0e-86 322.8 318 77.4
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 3.0e-86 322.8 323 77.7
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 5.1e-86 322.0 316 77.2
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 5.1e-86 322.0 318 77.7
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 8.7e-86 321.2 325 77.5
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 2.5e-85 319.7 316 86.7
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.5e-85 319.7 317 77.6
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 5.6e-85 318.5 316 76.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 9.6e-85 317.8 316 82.6
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.6e-84 317.0 316 76.6
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.1e-84 316.6 316 76.6
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.1e-84 316.6 316 76.6
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 2.8e-84 316.2 318 77.7
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 6.2e-84 315.1 316 86.4
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.2e-84 315.1 316 76.3
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 8.1e-84 314.7 323 76.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 3.1e-83 312.8 316 75.6
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 4.0e-83 312.4 316 85.4
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 4.0e-83 312.4 316 84.5
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 9.0e-83 311.2 318 75.2
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 9.0e-83 311.2 316 80.1
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.6e-82 309.7 318 80.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 3.4e-82 309.3 316 82.9
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.8e-82 308.5 318 74.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 5.8e-82 308.5 316 83.2
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 9.9e-82 307.8 317 86.4
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 9.9e-82 307.8 318 73.9
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 8.4e-81 304.7 318 73.0
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.2e-80 302.8 309 77.3
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.2e-80 302.4 306 77.8
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 4.2e-80 302.4 317 75.1
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 3.5e-79 299.3 317 82.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.9e-78 295.8 308 74.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-77 293.5 308 74.4
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.4e-75 287.3 311 82.6
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.6e-74 283.1 142 95.1
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 7.4e-69 265.0 306 80.4
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 4.1e-67 259.2 142 81.7
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 9.0e-67 258.1 142 81.0
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 5.9e-66 255.4 316 74.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.7e-65 253.8 142 81.0
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.2e-65 253.4 142 80.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 5.0e-65 252.3 142 79.6
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.1e-64 251.1 145 82.1
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 79.6
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 78.9
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 78.9
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 81.7
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 3.2e-64 249.6 142 78.2
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 9.3e-64 248.1 142 78.9
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-63 247.7 144 81.9
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.2e-63 247.7 144 79.9
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 80.4
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 80.4
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.6e-63 247.3 145 82.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 2.1e-63 246.9 142 78.2
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.1e-63 246.9 144 81.2
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.1e-63 246.9 144 80.6
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.1e-63 246.9 143 78.3
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.7e-63 246.5 142 79.6
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.6e-63 246.1 143 78.3
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 3.6e-63 246.1 142 78.9
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 4.6e-63 245.7 143 81.8
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 4.6e-63 245.7 142 80.3
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 7.9e-63 245.0 142 80.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 7.9e-63 245.0 142 80.3
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.0e-62 244.6 142 80.3
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.8e-62 243.8 143 79.0
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 3.0e-62 243.0 144 78.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 3.9e-62 242.7 144 79.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 6.7e-62 241.9 142 76.8
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 8.7e-62 241.5 142 78.9
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.1e-61 241.1 142 77.5
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.9e-61 240.4 143 78.3
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-61 240.0 142 75.4
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-61 240.0 142 76.1
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 7.4e-61 238.4 144 78.5
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 7.4e-61 238.4 144 76.4
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 7.4e-61 238.4 142 76.8
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.2e-60 236.9 144 75.7
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 8.2e-60 235.0 318 73.9
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 74.6
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 6.9e-59 231.9 147 73.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 6.9e-59 231.9 142 70.4
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 2.6e-58 229.9 142 72.5
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 3.4e-58 229.6 142 73.9
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.4e-58 229.6 142 70.4
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 2.2e-57 226.9 142 69.0
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.1e-56 224.6 142 70.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.1e-56 224.6 142 70.4
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.4e-56 224.2 277 70.8
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.1e-54 215.7 317 68.5
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.1e-51 208.0 315 59.4
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 5.0e-49 199.1 318 68.6
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 9.4e-48 194.9 310 67.7
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.0e-46 191.4 317 60.9
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 8.8e-46 188.3 142 62.0
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 1.7e-44 184.1 144 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 5.3e-43 179.1 304 68.4
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 7.7e-42 175.3 331 48.3
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 8.0e-39 165.2 115 62.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.8e-38 164.1 305 64.9
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.8e-36 156.8 105 67.6
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.1e-31 140.6 205 70.2
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.0e-29 134.0 113 59.3
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.3e-28 131.3 111 55.0
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 3.0e-22 110.2 93 57.0
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.8e-22 109.0 305 33.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.9e-16 90.9 312 24.4
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.0e-13 80.9 142 36.6
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.4e-11 74.7 119 39.5
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.8e-11 74.3 111 40.5
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-09 68.6 91 37.4
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 3.0e-09 67.0 73 84.9
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 3.3e-08 63.5 77 42.9
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 2.8e-07 60.5 35 71.4
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 1.4e-06 58.2 32 78.1


User provided reference genes

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