Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.9e-143 512.7 445 100.0
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 3.5e-117 426.0 447 82.8
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 5.3e-113 412.1 442 88.9
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.3e-106 391.0 382 90.1
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.6e-106 390.6 442 78.3
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.9e-105 385.2 382 89.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.5e-99 367.5 443 75.2
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.4e-99 365.2 443 75.4
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.1e-98 363.6 387 81.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.4e-95 351.7 319 89.0
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.3e-92 343.6 438 73.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.1e-90 337.0 439 70.6
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 9.0e-89 331.6 388 78.6
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 4.5e-88 329.3 390 77.7
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 4.5e-88 329.3 408 76.5
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.0e-87 328.2 388 79.6
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 5.5e-86 322.4 384 79.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.7e-85 320.1 388 74.7
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.9e-85 318.5 387 75.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.3e-84 317.8 450 68.7
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.0e-84 316.6 388 79.6
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.9e-83 313.9 386 74.6
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 5.7e-83 312.4 443 70.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 9.7e-83 311.6 385 71.9
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 2.8e-82 310.1 408 71.3
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.8e-82 309.3 382 72.5
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.4e-81 307.0 462 64.7
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 6.9e-81 305.4 383 73.6
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.2e-80 304.7 445 65.6
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.4e-80 303.1 382 73.8
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.3e-79 301.2 445 65.6
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.9e-79 300.1 456 65.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.8e-79 299.7 382 73.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.0e-79 299.3 459 66.2
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.1e-78 298.1 382 73.3
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.4e-78 297.7 381 72.7
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.4e-78 297.7 381 72.7
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.2e-78 296.6 448 62.7
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 5.5e-78 295.8 387 78.6
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.0e-76 291.6 383 70.8
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.8e-76 290.8 383 77.5
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.3e-76 290.4 386 70.7
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 1.5e-75 287.7 385 73.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 7.4e-75 285.4 387 73.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.3e-74 284.6 381 70.1
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.7e-74 284.3 383 72.6
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.7e-74 284.3 381 73.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.2e-74 283.9 383 66.3
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 8.2e-74 282.0 381 76.1
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.8e-73 280.8 351 73.5
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.8e-73 280.8 386 71.8
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 4.1e-73 279.6 380 69.2
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.9e-73 278.9 384 69.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 6.9e-73 278.9 456 68.4
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.9e-73 278.9 381 74.0
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.5e-72 277.7 385 70.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.6e-72 276.9 320 74.1
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 3.8e-71 273.1 189 69.8
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.4e-70 271.2 385 74.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.5e-70 270.4 381 69.8
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 9.4e-70 268.5 420 65.2
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.2e-69 268.1 405 73.3
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.6e-69 267.7 386 71.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.7e-69 266.2 383 74.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.0e-68 265.0 385 67.5
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.4e-68 264.6 344 71.8
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.8e-68 264.2 384 69.0
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.3e-68 263.8 385 66.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 3.0e-68 263.5 390 70.8
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.0e-67 260.8 386 70.5
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.0e-67 260.8 321 74.1
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.6e-67 260.4 395 66.6
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.6e-67 260.4 385 71.2
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.4e-67 259.6 395 66.6
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 4.4e-67 259.6 384 69.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 7.4e-67 258.8 385 63.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 9.7e-67 258.5 446 59.4
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 9.7e-67 258.5 451 66.7
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.2e-66 257.3 385 68.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 2.8e-66 256.9 389 63.0
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 8.2e-66 255.4 391 65.7
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.1e-65 255.0 323 73.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.8e-65 254.2 452 63.1
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.0e-65 252.3 453 67.8
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.1e-65 251.9 384 66.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-64 251.5 320 73.1
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 3.5e-64 250.0 387 62.5
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.5e-64 249.6 385 68.3
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.7e-63 247.7 349 68.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.9e-63 246.9 396 71.5
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.9e-63 246.9 396 71.5
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.9e-63 246.9 384 63.3
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 3.8e-63 246.5 378 66.4
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.0e-63 246.1 387 67.4
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 6.5e-63 245.7 410 69.5
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 8.5e-63 245.4 382 66.5
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-62 245.0 393 63.1
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.5e-62 244.6 391 68.8
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 2.5e-62 243.8 389 71.7
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.5e-62 243.8 387 67.4
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 4.2e-62 243.0 388 70.1
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 5.5e-62 242.7 444 63.3
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 7.2e-62 242.3 388 63.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 9.4e-62 241.9 382 70.7
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.1e-61 240.7 392 63.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.6e-61 240.0 382 72.5
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 8.0e-61 238.8 379 64.9
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.8e-60 237.7 452 61.1
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 5.2e-60 236.1 453 60.7
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 5.2e-60 236.1 453 60.7
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 5.2e-60 236.1 453 60.7
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 5.2e-60 236.1 373 68.4
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 5.7e-59 232.6 385 71.4
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 5.7e-59 232.6 322 70.8
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-58 231.5 389 65.0
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.8e-58 230.3 378 66.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.1e-57 228.4 380 64.7
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.1e-57 226.9 388 59.5
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 5.3e-57 226.1 387 68.5
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.9e-55 220.3 386 60.4
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 8.5e-55 218.8 322 68.3
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-52 211.1 298 71.8
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 3.0e-52 210.3 389 60.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.0e-51 207.6 450 54.4
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 7.0e-49 199.1 392 61.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.0e-48 197.6 392 56.9
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.6e-43 180.6 327 64.2
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 7.5e-43 179.1 386 64.8
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.3e-42 178.3 248 95.2
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.7e-42 177.9 374 66.3
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.8e-42 177.2 390 64.4
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.9e-42 176.4 389 65.3
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 8.3e-42 175.6 387 64.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 8.3e-42 175.6 387 64.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 8.3e-42 175.6 282 78.7
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.1e-41 173.3 235 46.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.0e-39 168.7 231 50.2
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.0e-39 168.7 399 61.2
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.9e-39 167.2 396 58.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.9e-39 167.2 381 64.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.8e-39 166.8 372 38.2
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 8.6e-39 165.6 388 41.2
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.6e-37 161.4 280 79.6
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 4.7e-37 159.8 264 68.9
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 8.0e-37 159.1 395 58.0
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.2e-35 155.2 390 52.6
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-33 148.3 327 63.6
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.7e-32 144.1 242 74.0
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.0e-31 142.1 169 47.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.3e-30 137.1 336 49.7
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 7.3e-30 136.0 256 70.3
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.8e-29 134.0 124 55.6
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 8.3e-26 122.5 391 47.6
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.2e-25 119.0 396 43.4
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.7e-24 117.5 404 54.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.6e-23 112.8 204 39.2
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 4.9e-18 96.7 120 46.7
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.7e-16 90.9 213 41.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.7e-15 88.2 91 59.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.0e-15 87.4 247 57.9
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.1e-15 86.7 92 59.8
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 6.6e-15 86.3 108 64.8
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 9.5e-14 82.4 52 67.3
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.1e-13 81.3 194 31.4
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.3e-12 77.8 52 63.5
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 6.8e-12 76.3 99 46.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 5.4e-09 66.6 87 47.1
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.1e-08 64.7 101 62.4
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 2.1e-08 64.7 51 56.9
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.7e-08 64.3 155 31.0
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 6.0e-08 63.2 51 54.9
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-07 60.8 46 60.9
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-07 60.8 46 60.9


User provided reference genes

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