Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 4.7e-224 780.8 375 100.0
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 7.6e-198 693.7 376 87.8
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.1e-191 673.3 395 83.0
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 1.4e-188 662.9 376 83.2
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 2.5e-188 662.1 376 83.2
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 7.1e-188 660.6 376 83.2
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 1.0e-162 577.0 376 72.1
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 2.3e-162 575.9 376 72.6
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 3.9e-162 575.1 378 70.9
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.5e-161 573.2 376 72.9
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 1.2e-158 563.5 378 69.3
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 2.0e-158 562.8 380 71.3
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 2.6e-158 562.4 373 71.3
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 2.6e-158 562.4 377 70.3
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 4.5e-158 561.6 377 70.3
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 6.5e-157 557.8 377 70.6
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 1.1e-156 557.0 374 70.6
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 3.2e-156 555.4 377 70.3
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 2.1e-155 552.7 372 70.2
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 2.1e-155 552.7 376 67.8
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 8.0e-155 550.8 374 68.7
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 2.3e-154 549.3 374 70.6
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 2.8e-152 542.3 371 69.0
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 3.1e-151 538.9 381 65.6
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 5.3e-151 538.1 378 68.8
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 2.7e-150 535.8 376 66.2
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 2.7e-150 535.8 377 69.0
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 3.5e-150 535.4 376 67.3
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 3.5e-150 535.4 374 68.2
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.7e-150 534.3 374 67.9
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 7.7e-150 534.3 379 66.8
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.9e-149 532.3 373 66.2
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 6.5e-149 531.2 374 67.4
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 1.1e-148 530.4 375 65.6
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 2.5e-148 529.3 374 68.4
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 3.2e-148 528.9 376 65.4
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.2e-148 528.9 375 67.7
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.2e-148 528.5 374 67.6
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 1.2e-147 526.9 376 64.6
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.2e-147 526.9 376 65.4
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 1.4e-146 523.5 374 66.0
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 3.0e-146 522.3 375 66.1
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 8.8e-146 520.8 377 65.3
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 9.8e-145 517.3 369 66.4
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.8e-144 515.8 369 64.8
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 6.3e-144 514.6 352 68.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-142 510.4 369 64.2
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 5.9e-142 508.1 373 63.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.9e-141 505.8 367 64.0
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 5.0e-141 505.0 378 65.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.6e-139 500.0 360 65.8
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 2.8e-139 499.2 381 62.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-138 496.9 361 64.0
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 2.0e-137 493.0 378 63.0
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 7.5e-137 491.1 377 60.2
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 9.8e-137 490.7 384 60.9
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 2.2e-136 489.6 377 59.7
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 3.7e-136 488.8 374 63.1
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 3.7e-136 488.8 377 59.4
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.9e-136 488.4 374 63.9
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 8.3e-136 487.6 374 62.8
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 8.3e-136 487.6 377 62.3
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 1.1e-135 487.3 366 63.7
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 1.8e-135 486.5 400 58.8
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 3.1e-135 485.7 374 62.6
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 3.1e-135 485.7 370 62.7
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.6e-134 483.4 381 60.6
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 2.0e-134 483.0 383 61.1
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 2.0e-134 483.0 378 64.6
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 2.5e-132 476.1 375 61.6
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 6.1e-131 471.5 377 59.9
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 4.9e-128 461.8 367 61.0
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 1.3e-125 453.8 378 57.9
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.1e-122 444.1 376 59.3
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 2.0e-121 439.9 373 57.6
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 5.4e-119 431.8 370 58.6
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 1.6e-118 430.3 370 55.7
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 2.3e-117 426.4 363 56.7
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 4.9e-112 408.7 247 75.7
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.5e-100 370.5 389 49.9
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 6.4e-96 355.1 380 45.5
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 7.1e-95 351.7 316 55.7
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 1.6e-94 350.5 401 48.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 8.4e-88 328.2 354 51.1
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 6.0e-78 295.4 385 41.6
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.3e-77 294.3 298 50.0
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 5.7e-76 288.9 185 71.9
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 3.2e-71 273.1 223 60.5
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 5.5e-71 272.3 373 39.7
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 2.3e-69 266.9 376 40.2
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 4.1e-66 256.1 207 61.8
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 1.5e-65 254.2 206 59.2
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 7.7e-65 251.9 220 56.4
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 2.2e-64 250.4 149 73.8
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 7.2e-63 245.4 317 40.4
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 2.7e-62 243.4 185 65.9
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 4.6e-62 242.7 249 50.6
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 7.9e-62 241.9 184 64.7
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 3.3e-60 236.5 407 34.6
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 3.1e-58 229.9 253 48.6
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.0e-53 214.9 185 56.2
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.8e-51 206.8 211 50.7
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.8e-51 206.8 211 50.7
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 1.4e-50 204.5 180 56.7
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 2.7e-46 190.3 199 51.3
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 7.4e-44 182.2 137 59.9
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.1e-42 178.3 142 62.7
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.2e-41 174.9 148 58.8
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 1.6e-41 174.5 125 66.4
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 8.5e-40 168.7 270 39.6
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 8.5e-40 168.7 106 76.4
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 3.2e-39 166.8 140 57.9
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 1.5e-31 141.4 173 43.9
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.2e-22 111.7 79 65.8
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 8.0e-22 109.0 96 59.4
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.4e-21 108.2 156 34.6
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 9.8e-20 102.1 106 42.5
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 4.9e-19 99.8 348 25.6
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 2.4e-18 97.4 114 47.4
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 1.9e-15 87.8 73 56.2
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 1.2e-14 85.1 161 39.8
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.2e-14 85.1 201 34.3
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.2e-14 85.1 73 56.2
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 2.1e-06 57.8 33 72.7
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 3.6e-06 57.0 71 45.1


User provided reference genes

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