Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G165600 Theobroma cacao HOM05D000038 ORTHO05D000423 5.2e-78 294.3 145 100.0
Os02g0234450 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 7.7e-13 77.8 147 30.6
Aqoxy4G00271 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 1.7e-12 76.6 126 34.1
MBI06_g18690_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 1.7e-12 76.6 140 29.3
Aqoxy4G00242 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 1.4e-11 73.6 141 28.4
HPP92_008754 Vanilla planifolia HOM05D000038 ORTHO05D000423 1.4e-11 73.6 141 29.1
Os01g0958200 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 4.2e-11 72.0 140 29.3
QL02p078208 Quercus lobata HOM05D000038 ORTHO05D000423 5.5e-11 71.6 137 30.7
PGSC0003DMG400028461 Solanum tuberosum HOM05D000038 ORTHO05D000423 1.6e-10 70.1 137 29.9
Aqoxy4G00269 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 2.1e-10 69.7 123 31.7
Eucgr.K01181 Eucalyptus grandis HOM05D000038 ORTHO05D000423 2.7e-10 69.3 142 24.6
Nitab4.5_0001778g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000423 2.7e-10 69.3 130 31.5
SEGI_30288 Sequoiadendron giganteum HOM05D000038 ORTHO05D000423 2.7e-10 69.3 142 29.6
Sopen02g021030 Solanum pennellii HOM05D000038 ORTHO05D000423 3.6e-10 68.9 137 29.9
Nn3g21098 Nelumbo nucifera HOM05D000038 ORTHO05D000423 4.6e-10 68.6 141 28.4
Peaxi162Scf00154g01023 Petunia axillaris HOM05D000038 ORTHO05D000423 6.1e-10 68.2 147 28.6
SEGI_25459 Sequoiadendron giganteum HOM05D000038 ORTHO05D000423 1.0e-09 67.4 142 27.5
Aqoxy4G00274 Aquilegia oxysepala HOM05D001422 ORTHO05D000423 1.8e-09 66.6 126 30.2
Nitab4.5_0009597g0030 Nicotiana tabacum HOM05D000038 ORTHO05D000423 2.3e-09 66.2 130 30.8
Rhsim06G0125300 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.3e-09 66.2 143 29.4
PGSC0003DMG400046324 Solanum tuberosum HOM05D000038 ORTHO05D000423 3.9e-09 65.5 142 28.9
Atru.chr10.1544 Acer truncatum HOM05D000038 ORTHO05D000423 6.7e-09 64.7 143 30.1
Actinidia35184 Actinidia chinensis HOM05D000038 ORTHO05D000423 6.7e-09 64.7 143 28.0
Cpa.g.sc50.59 Carica papaya HOM05D000038 ORTHO05D000423 6.7e-09 64.7 142 27.5
Cc04_g08370 Coffea canephora HOM05D000038 ORTHO05D000423 6.7e-09 64.7 143 28.7
Zm00001eb239040 Zea mays HOM05D000038 ORTHO05D000423 8.8e-09 64.3 140 31.4
Eucgr.K01180 Eucalyptus grandis HOM05D000038 ORTHO05D000423 1.5e-08 63.5 142 31.0
Atru.chr10.1533 Acer truncatum HOM05D000038 ORTHO05D000423 2.0e-08 63.2 135 29.6
Cc05_g08950 Coffea canephora HOM05D000038 ORTHO05D000423 2.5e-08 62.8 140 30.0
Cc10_g10640 Coffea canephora HOM05D000038 ORTHO05D000423 2.5e-08 62.8 139 28.1
ECA233G5689 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.5e-08 62.8 139 22.3
HanXRQChr13g0387641 Helianthus annuus HOM05D002629 ORTHO05D015691 3.3e-08 62.4 140 23.6
Nn3g21097 Nelumbo nucifera HOM05D000038 ORTHO05D000423 3.3e-08 62.4 139 32.4
Cc05_g08940 Coffea canephora HOM05D000038 ORTHO05D000423 4.3e-08 62.0 140 29.3
Aqoxy3G01238 Aquilegia oxysepala HOM05D001422 ORTHO05D000423 5.7e-08 61.6 144 24.3
CAN.G803.26 Capsicum annuum HOM05D000038 ORTHO05D000423 5.7e-08 61.6 143 28.0
HanXRQChr13g0386471 Helianthus annuus HOM05D000038 ORTHO05D000423 5.7e-08 61.6 140 24.3
MBI02_g01134_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 5.7e-08 61.6 161 28.6
Eucgr.K01182 Eucalyptus grandis HOM05D000038 ORTHO05D000423 7.4e-08 61.2 138 26.8
Manes.17G060100 Manihot esculenta HOM05D000038 ORTHO05D000423 7.4e-08 61.2 140 27.9
TAR482G0002 Trochodendron aralioides HOM05D000038 ORTHO05D000423 9.7e-08 60.8 139 29.5
Cc04_g08340 Coffea canephora HOM05D000038 ORTHO05D000423 1.3e-07 60.5 144 24.3
TAR030G0001 Trochodendron aralioides HOM05D000038 ORTHO05D000423 1.3e-07 60.5 139 29.5
vmacro12425 Vaccinium macrocarpon HOM05D000038 ORTHO05D000423 1.3e-07 60.5 139 28.8
Eucgr.K01175 Eucalyptus grandis HOM05D000038 ORTHO05D000423 1.7e-07 60.1 145 26.9
MBI07_g00444_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D048545 1.7e-07 60.1 154 27.9
SEGI_00131 Sequoiadendron giganteum HOM05D000038 ORTHO05D000423 1.7e-07 60.1 120 35.0
ECA233G3774 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.2e-07 59.7 140 24.3
SEGI_29842 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 2.8e-07 59.3 142 29.6
SEGI_34790 Sequoiadendron giganteum HOM05D000038 ORTHO05D000423 2.8e-07 59.3 137 28.5
Dinv38019 Davidia involucrata HOM05D001422 ORTHO05D000423 3.7e-07 58.9 127 34.6
ECA233G3313 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.7e-07 58.9 140 20.7
Aqoxy2G03971 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 4.8e-07 58.5 125 31.2
vmacro11949 Vaccinium macrocarpon HOM05D000038 ORTHO05D000423 4.8e-07 58.5 146 32.2
Aqoxy4G00240 Aquilegia oxysepala HOM05D001422 ORTHO05D000423 6.3e-07 58.2 125 27.2
PGR142G0972 Punica granatum HOM05D000038 ORTHO05D000423 6.3e-07 58.2 136 24.3
Rhsim06G0123800 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.3e-07 58.2 123 30.1
Rhsim06G0209100 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.3e-07 58.2 140 30.7
PGR142G2626 Punica granatum HOM05D000038 ORTHO05D000423 8.2e-07 57.8 141 26.2
QL08p042647 Quercus lobata HOM05D000038 ORTHO05D000423 8.2e-07 57.8 148 28.4
Actinidia24392 Actinidia chinensis HOM05D000038 ORTHO05D000423 1.1e-06 57.4 140 27.9
Actinidia24394 Actinidia chinensis HOM05D001422 ORTHO05D000423 1.1e-06 57.4 138 29.0
ATR0665G012 Amborella trichopoda HOM05D000038 ORTHO05D000423 1.1e-06 57.4 123 30.1
Ciclev10015566m.g Citrus clementina HOM05D001422 ORTHO05D000423 1.1e-06 57.4 139 28.8
Duzib235G1113 Durio zibethinus HOM05D000038 ORTHO05D000423 1.4e-06 57.0 136 28.7
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.4e-06 57.0 126 30.2
Manes.17G060201 Manihot esculenta HOM05D000038 ORTHO05D000423 1.4e-06 57.0 125 31.2
Nitab4.5_0000883g0020 Nicotiana tabacum HOM05D000038 ORTHO05D000423 1.4e-06 57.0 143 26.6
Oeu030083.1 Olea europaea HOM05D000038 ORTHO05D000423 1.4e-06 57.0 134 35.1
Peaxi162Scf00154g01144 Petunia axillaris HOM05D000038 ORTHO05D048545 1.4e-06 57.0 133 29.3
Dinv11420 Davidia involucrata HOM05D007975 ORTHO05D000423 1.8e-06 56.6 124 27.4
Duzib235G1388 Durio zibethinus HOM05D000038 ORTHO05D000423 1.8e-06 56.6 139 28.8
Eucgr.L01598 Eucalyptus grandis HOM05D000038 ORTHO05D000423 1.8e-06 56.6 138 26.1
SEGI_04295 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 1.8e-06 56.6 142 27.5
Dinv12361 Davidia involucrata HOM05D000038 ORTHO05D000423 2.4e-06 56.2 137 29.2
Nitab4.5_0000883g0080 Nicotiana tabacum HOM05D000038 ORTHO05D000423 2.4e-06 56.2 139 28.1
Nitab4.5_0003133g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000423 2.4e-06 56.2 145 23.4
Os06g0552000 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 2.4e-06 56.2 124 24.2
CAN.G913.5 Capsicum annuum HOM05D000038 ORTHO05D000143 3.1e-06 55.8 148 32.4
Dinv01650 Davidia involucrata HOM05D000038 ORTHO05D000423 3.1e-06 55.8 137 29.2
HanXRQChr13g0386481 Helianthus annuus HOM05D000038 ORTHO05D000423 3.1e-06 55.8 140 22.9
HanXRQChr13g0386551 Helianthus annuus HOM05D000038 ORTHO05D000423 3.1e-06 55.8 143 22.4
Lsat_1_v5_gn_8_31781 Lactuca sativa HOM05D001422 ORTHO05D000423 4.1e-06 55.5 125 27.2
CAN.G464.1 Capsicum annuum HOM05D000038 ORTHO05D000423 5.3e-06 55.1 143 26.6
CAN.G464.2 Capsicum annuum HOM05D000038 ORTHO05D011614 5.3e-06 55.1 137 27.0
Hma1.2p1_0006F.1_g004770 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 5.3e-06 55.1 142 26.8
Peaxi162Scf00154g00092 Petunia axillaris HOM05D000038 ORTHO05D000423 5.3e-06 55.1 139 26.6
GSVIVG01020771001 Vitis vinifera HOM05D000038 ORTHO05D000423 5.3e-06 55.1 130 28.5
Actinidia11182 Actinidia chinensis HOM05D000038 ORTHO05D000423 6.9e-06 54.7 124 30.6
Eucgr.K01410 Eucalyptus grandis HOM05D000038 ORTHO05D000423 6.9e-06 54.7 121 33.1
Sopen07g029040 Solanum pennellii HOM05D000038 ORTHO05D000423 6.9e-06 54.7 133 26.3
HanXRQChr13g0386561 Helianthus annuus HOM05D000038 ORTHO05D000423 9.1e-06 54.3 131 22.9


User provided reference genes

Program Settings