Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 4.9e-124 448.0 254 100.0
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 5.2e-81 305.1 213 80.3
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.4e-73 280.4 213 74.2
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 3.0e-73 279.3 215 68.8
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.2e-73 278.5 213 73.7
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.2e-72 277.3 213 73.7
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.4e-54 217.2 187 60.4
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.8e-54 216.9 185 60.5
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.7e-53 213.0 205 54.6
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 7.8e-53 211.5 211 55.9
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.5e-51 207.2 208 52.9
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.2e-50 204.1 190 57.4
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.6e-50 203.8 190 56.3
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.0e-49 201.1 202 54.0
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.0e-49 201.1 215 52.6
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 1.8e-49 200.3 196 56.1
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.3e-49 199.9 208 52.9
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.2e-48 197.6 206 53.4
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.6e-48 196.4 175 56.0
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.4e-48 195.7 205 49.8
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.3e-47 194.1 193 52.3
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.7e-47 193.7 202 52.0
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 4.9e-47 192.2 216 50.5
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 4.1e-46 189.1 205 50.2
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 7.0e-46 188.3 220 48.2
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.5e-45 186.0 208 49.0
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 4.6e-45 185.7 210 50.5
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-44 184.5 202 50.0
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.3e-44 184.1 215 49.8
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.7e-44 183.7 210 50.0
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.7e-44 183.7 214 49.5
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 2.5e-43 179.9 219 51.1
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 4.3e-43 179.1 201 49.8
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.3e-43 179.1 213 49.3
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 5.6e-43 178.7 186 47.8
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 9.5e-43 177.9 214 50.9
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 1.2e-42 177.6 186 55.4
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 1.2e-42 177.6 207 47.8
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.8e-42 176.4 206 45.6
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 6.2e-42 175.3 194 50.0
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.1e-41 174.5 213 46.0
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 1.4e-41 174.1 186 54.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.1e-41 172.9 205 47.8
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 4.0e-41 172.6 204 47.5
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 6.8e-41 171.8 210 51.0
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 6.8e-41 171.8 231 48.1
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 6.8e-41 171.8 219 49.8
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 6.8e-41 171.8 212 47.2
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 8.9e-41 171.4 211 49.8
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.2e-40 171.0 206 46.1
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.5e-40 170.6 207 48.3
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.5e-40 170.6 209 50.7
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.5e-40 170.6 186 54.8
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 2.0e-40 170.2 186 54.3
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 5.8e-40 168.7 219 50.2
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.5e-40 168.3 212 47.6
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.9e-39 166.4 213 43.7
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.9e-39 166.4 213 43.7
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 4.9e-39 165.6 212 46.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 1.1e-38 164.5 222 42.3
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.4e-38 164.1 210 44.8
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 1.4e-38 164.1 200 43.5
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.9e-38 163.7 204 45.6
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.9e-38 163.7 206 46.1
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 2.4e-38 163.3 206 44.7
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 2.4e-38 163.3 213 42.7
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 7.1e-38 161.8 206 44.2
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.2e-37 161.0 214 44.4
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.2e-37 161.0 205 44.9
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.2e-37 161.0 220 44.1
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 4.6e-37 159.1 211 42.7
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.8e-37 158.3 213 42.7
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.8e-37 158.3 213 42.7
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 7.8e-37 158.3 220 43.6
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.0e-36 157.9 196 43.9
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.7e-36 157.1 189 45.5
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.7e-36 157.1 211 44.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 2.3e-36 156.8 214 42.5
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 3.0e-36 156.4 196 44.9
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 5.1e-36 155.6 209 43.5
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 5.1e-36 155.6 207 44.4
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 8.6e-36 154.8 218 43.1
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 2.5e-35 153.3 212 41.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 9.5e-35 151.4 213 41.8
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.4e-33 147.5 278 36.3
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 1.4e-33 147.5 207 43.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.8e-33 147.1 188 43.1
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.3e-33 146.7 217 39.6
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 8.9e-33 144.8 217 39.6
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 7.6e-32 141.7 199 41.7
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 1.3e-31 141.0 204 41.2
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 1.4e-30 137.5 205 40.0
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.8e-29 131.7 177 43.5
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.3e-28 131.0 218 43.1
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.3e-28 131.0 177 43.5
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 3.0e-28 129.8 181 43.6
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.3e-27 125.9 227 40.5
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.1e-25 119.8 109 53.2
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.9e-25 118.6 157 51.0
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.4e-24 116.3 107 52.3
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.3e-23 114.4 212 33.5
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.3e-23 114.4 209 37.8
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.7e-23 114.0 84 64.3
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.9e-23 113.2 218 37.2
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 6.4e-23 112.1 155 44.5
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.1e-21 107.1 109 48.6
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.3e-20 104.4 83 55.4
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 3.9e-20 102.8 109 47.7
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 3.6e-18 96.3 213 36.6
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 6.2e-18 95.5 166 36.7
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 8.1e-18 95.1 183 32.2
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 9.9e-16 88.2 214 33.6
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 7.1e-14 82.0 90 48.9
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 1.8e-12 77.4 54 66.7
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.5e-11 74.3 127 37.0
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.9e-11 73.9 72 54.2
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 5.6e-11 72.4 153 33.3
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.1e-09 68.2 102 40.2
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 3.1e-09 66.6 63 50.8


User provided reference genes

Program Settings