Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.0e-114 415.2 214 100.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.0e-94 349.4 234 81.6
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.5e-94 348.2 235 80.4
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.5e-94 348.2 234 81.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.2e-93 345.9 235 79.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.4e-92 343.2 234 80.3
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.5e-92 341.3 235 78.7
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.9e-90 335.1 219 81.3
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.5e-89 332.4 234 76.1
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 7.4e-89 330.9 291 64.3
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-80 302.8 235 66.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 4.8e-80 301.6 234 67.9
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.4e-79 300.1 235 69.4
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.4e-79 299.3 234 68.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 4.1e-79 298.5 235 68.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 5.9e-78 294.7 235 66.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 7.7e-78 294.3 234 67.9
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.0e-77 293.9 235 67.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.2e-77 292.7 234 69.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.8e-77 292.0 215 70.2
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.0e-77 291.6 235 66.4
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 6.5e-77 291.2 235 66.0
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 6.5e-77 291.2 225 69.3
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 6.5e-77 291.2 235 69.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 8.5e-77 290.8 235 66.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.6e-75 286.6 257 61.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.7e-75 285.0 218 69.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.7e-75 285.0 235 66.4
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 7.9e-75 284.3 235 64.3
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-74 283.5 235 65.1
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.0e-74 282.3 235 65.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.0e-74 282.3 235 64.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 6.7e-74 281.2 235 65.1
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.7e-74 281.2 235 64.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.0e-73 279.6 234 66.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-73 279.6 235 63.4
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.3e-73 278.9 236 64.0
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 4.4e-73 278.5 235 66.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 5.7e-73 278.1 255 61.2
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 7.4e-73 277.7 235 63.4
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 9.7e-73 277.3 236 63.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-72 276.6 235 62.6
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.8e-72 275.8 215 68.4
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 8.2e-72 274.2 235 63.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 8.2e-72 274.2 235 63.4
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.1e-71 273.9 235 63.0
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.8e-71 273.1 236 61.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.8e-71 273.1 236 62.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.8e-71 273.1 235 62.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.4e-71 272.7 228 64.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.3e-71 271.6 236 62.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 5.3e-71 271.6 235 61.3
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.0e-71 271.2 225 65.3
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.1e-71 270.8 235 61.7
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.1e-71 270.8 235 61.7
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 9.1e-71 270.8 224 66.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.2e-70 270.4 218 68.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-70 270.0 234 62.0
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.0e-70 269.6 208 67.8
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.0e-70 269.6 235 61.3
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 3.5e-70 268.9 235 62.6
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.5e-70 268.5 217 65.4
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.5e-70 268.5 217 65.4
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.5e-70 268.5 222 66.2
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 5.9e-70 268.1 217 65.0
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.7e-70 267.7 222 64.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.0e-69 267.3 236 61.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.0e-69 267.3 218 66.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.0e-69 267.3 224 66.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.9e-69 265.8 215 64.7
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.9e-69 265.8 235 63.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.9e-69 265.8 235 62.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 3.8e-69 265.4 235 62.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 5.0e-69 265.0 235 61.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 5.0e-69 265.0 226 62.4
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-68 263.8 213 65.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.5e-68 263.5 236 62.3
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.5e-68 263.5 215 68.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.5e-68 263.5 224 65.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.9e-68 263.1 236 61.4
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 2.5e-68 262.7 236 61.4
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.5e-68 262.7 236 60.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.2e-68 261.9 236 62.7
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.2e-68 261.9 223 64.6
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.5e-68 261.5 236 62.7
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 7.2e-68 261.2 236 61.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.2e-67 260.4 218 62.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.7e-67 258.5 220 63.6
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.7e-67 258.5 214 65.9
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 8.0e-67 257.7 234 61.5
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 8.0e-67 257.7 214 62.1
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-66 256.1 231 61.5
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 5.2e-66 255.0 236 60.6
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.7e-66 254.6 221 65.2
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.1e-65 253.8 213 67.6
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.0e-65 253.1 228 62.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.3e-65 252.3 223 61.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-65 252.3 228 62.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.4e-65 251.9 221 63.8
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.5e-65 251.1 234 58.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 9.7e-65 250.8 221 63.3
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.7e-64 250.0 208 63.5
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.7e-64 250.0 218 64.2
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 6.3e-64 248.1 226 60.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 8.2e-64 247.7 265 55.8
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.8e-63 246.5 216 63.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.1e-63 245.7 234 59.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.1e-63 245.4 219 62.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 9.1e-63 244.2 218 63.8
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.6e-62 243.4 210 64.3
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-62 243.4 242 57.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.9e-62 241.5 222 59.0
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.9e-62 241.5 208 63.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.2e-61 239.6 228 61.8
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 5.0e-61 238.4 213 62.9
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 6.5e-61 238.0 257 54.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.1e-60 237.3 223 60.5
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 4.2e-60 235.3 215 59.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 9.4e-60 234.2 212 59.4
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.4e-57 225.7 318 46.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.3e-56 223.8 168 70.8
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.7e-56 222.2 203 59.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-55 219.9 234 53.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 3.5e-54 215.7 170 67.6
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-52 210.7 162 67.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.7e-48 196.8 198 58.6
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.1e-47 192.6 218 46.3
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.6e-46 190.3 213 52.6
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.3e-44 182.6 232 46.6
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.8e-42 176.8 206 52.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.8e-42 176.8 209 47.4
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.8e-42 176.8 158 61.4
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.9e-42 174.5 157 61.1
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.4e-41 172.2 120 74.2
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 5.7e-41 171.8 158 60.8
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.7e-40 170.2 171 58.5
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 4.9e-40 168.7 174 48.9
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 8.3e-40 167.9 145 62.8
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 9.2e-39 164.5 121 71.1
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-38 164.1 146 65.8
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.9e-38 161.8 157 57.3
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.5e-36 156.4 117 67.5
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.0e-34 149.1 214 45.8
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.0e-33 146.7 120 64.2
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 8.3e-32 141.4 104 69.2
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.7e-30 136.3 208 41.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-28 131.0 120 60.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.3e-28 129.4 211 41.2
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-27 126.3 146 50.7
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.8e-26 123.6 277 35.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.8e-26 123.6 105 61.0
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.6e-25 119.8 105 59.0
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 5.8e-25 118.6 186 40.3
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 8.3e-24 114.8 124 46.8
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 5.4e-23 112.1 90 67.8
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.5e-20 103.2 59 84.7
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-17 94.4 72 66.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.2e-16 90.1 94 58.5
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 4.1e-15 85.9 154 39.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 5.4e-15 85.5 95 52.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.5e-14 82.8 81 59.3
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 6.0e-14 82.0 50 78.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.0e-13 81.3 79 51.9
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 6.6e-13 78.6 147 36.1
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.3e-12 75.9 240 30.8
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.3e-12 75.9 85 45.9
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 5.6e-12 75.5 75 60.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.6e-11 72.8 117 44.4
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 4.7e-11 72.4 45 75.6
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.2e-11 72.0 49 71.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 5.8e-09 65.5 45 66.7
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 4.2e-07 59.3 38 73.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 5.4e-07 58.9 138 31.9
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 1.6e-06 57.4 136 36.8
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 3.5e-06 56.2 32 78.1


User provided reference genes

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