Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 9.8e-167 590.1 311 100.0
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.3e-142 510.0 289 95.2
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 4.6e-140 501.5 252 96.0
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 3.9e-139 498.4 249 95.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.9e-138 496.1 286 93.7
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.3e-138 494.2 283 90.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 9.6e-138 493.8 254 94.9
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.8e-137 492.3 250 94.0
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.8e-137 491.5 287 87.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-136 489.6 249 94.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 2.4e-136 489.2 250 93.6
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 3.1e-136 488.8 285 88.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 4.0e-136 488.4 250 94.0
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 4.0e-136 488.4 285 90.9
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 5.3e-136 488.0 286 92.3
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 6.9e-136 487.6 251 91.6
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 9.0e-136 487.3 247 94.3
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.2e-135 486.9 247 94.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.2e-135 486.9 250 93.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.0e-135 486.1 250 93.2
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.6e-135 485.7 251 92.8
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 4.5e-135 485.0 285 89.1
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 4.5e-135 485.0 251 92.4
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 4.5e-135 485.0 285 88.1
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 4.5e-135 485.0 251 93.6
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-135 485.0 250 93.2
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 4.5e-135 485.0 249 93.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 4.5e-135 485.0 250 93.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 4.5e-135 485.0 250 92.8
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 4.5e-135 485.0 285 86.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 5.8e-135 484.6 250 93.2
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.8e-135 484.6 250 93.2
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 9.9e-135 483.8 251 91.6
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 9.9e-135 483.8 247 94.3
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.7e-134 483.0 249 93.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.7e-134 483.0 250 92.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 2.2e-134 482.6 248 94.0
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-134 482.6 250 92.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.8e-134 481.9 283 89.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.4e-133 479.9 259 89.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.9e-133 479.6 249 92.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.4e-133 479.2 249 93.2
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.4e-133 479.2 283 88.7
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.4e-133 479.2 283 85.5
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.2e-133 478.4 249 92.0
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.2e-133 478.4 249 92.0
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 4.2e-133 478.4 249 92.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 4.2e-133 478.4 252 91.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 4.2e-133 478.4 248 93.1
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 5.4e-133 478.0 253 91.3
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.4e-133 478.0 249 92.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 5.4e-133 478.0 285 86.7
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 7.1e-133 477.6 285 87.0
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 7.1e-133 477.6 247 93.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 9.3e-133 477.2 247 92.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.2e-132 476.9 248 91.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.2e-132 476.9 247 91.9
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.2e-132 476.9 248 91.5
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.2e-132 476.9 248 91.5
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.2e-132 476.9 248 91.1
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.6e-132 476.5 252 89.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 2.7e-132 475.7 250 90.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.7e-132 475.7 250 92.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.7e-132 475.7 247 92.7
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.6e-132 474.9 247 91.5
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 4.6e-132 474.9 285 91.2
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 4.6e-132 474.9 249 91.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.0e-132 474.6 250 90.4
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 6.0e-132 474.6 247 92.3
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.0e-132 474.6 279 87.8
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.0e-131 473.8 247 91.9
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.0e-131 473.8 247 91.5
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.8e-131 473.0 303 84.5
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 1.8e-131 473.0 247 91.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-131 473.0 245 93.1
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 3.0e-131 472.2 249 90.4
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 5.1e-131 471.5 248 90.3
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 8.7e-131 470.7 247 89.9
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.1e-130 470.3 246 91.5
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.1e-130 470.3 248 91.1
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.5e-130 469.9 242 93.8
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.5e-130 469.9 247 90.7
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.5e-130 469.2 249 90.4
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.3e-129 466.8 249 89.6
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.1e-129 466.1 253 87.7
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 1.5e-127 459.9 250 89.6
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.4e-127 458.8 250 86.8
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.9e-126 454.9 250 87.2
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 3.5e-124 448.7 248 87.5
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 8.7e-123 444.1 252 84.5
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.6e-121 439.9 226 94.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 4.8e-121 438.3 262 84.4
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.1e-120 437.2 249 86.3
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.1e-120 435.6 347 66.0
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 6.9e-120 434.5 228 92.1
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 4.5e-119 431.8 251 84.9
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.0e-118 430.6 239 85.8
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.7e-116 422.5 246 82.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.8e-115 419.9 242 83.9
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 2.0e-111 406.4 248 78.2
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.6e-108 395.6 218 89.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.6e-100 370.2 191 95.3
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 2.0e-95 353.2 189 92.1
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.7e-94 350.1 243 70.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.7e-89 333.6 169 95.3
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 4.8e-89 332.0 169 94.7
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.2e-87 327.4 179 89.9
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.9e-86 322.8 197 92.4
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 5.0e-86 322.0 170 92.9
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.8e-81 306.2 181 84.0
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.6e-79 300.4 185 78.4
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-75 287.7 164 87.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-74 284.3 164 84.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.4e-74 282.7 164 86.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 3.7e-73 279.3 145 94.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.9e-71 271.9 174 78.2
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 8.6e-70 268.1 145 89.7
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.2e-69 265.8 213 67.6
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.8e-68 263.1 153 85.6
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.0e-67 261.2 151 83.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.3e-67 260.0 153 85.0
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.4e-66 256.1 154 81.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 3.3e-61 239.6 146 81.5
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.5e-53 214.2 190 55.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.8e-52 209.9 151 72.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 4.7e-52 209.1 139 76.3
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.9e-41 173.3 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.9e-40 170.6 165 58.2
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 5.4e-32 142.5 76 92.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 9.6e-29 131.7 129 57.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.4e-27 127.9 94 75.5
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 3.1e-27 126.7 71 85.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.4e-24 117.9 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 7.6e-18 95.5 55 78.2
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 2.2e-17 94.0 55 76.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.6e-15 87.8 50 78.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.3e-14 84.0 44 81.8
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 8.7e-06 55.5 84 41.7


User provided reference genes

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